miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 61987 0.66 0.621995
Target:  5'- uGCCaCGCCUGCaaggGCacgggUGACGUGCGcGCc -3'
miRNA:   3'- -CGG-GUGGACGg---CGg----ACUGCACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 62035 0.69 0.457983
Target:  5'- aGCCCcCCgcugcGCCGCgUGGCgGUGCAcGCg -3'
miRNA:   3'- -CGGGuGGa----CGGCGgACUG-CACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 63988 0.67 0.582089
Target:  5'- aGCgCAUCU-CCGUCUG-CGUGCGGUg -3'
miRNA:   3'- -CGgGUGGAcGGCGGACuGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 65026 0.67 0.601999
Target:  5'- gGCCCACCUcguacgGCaggggGCCcGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGA------CGg----CGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 65767 0.68 0.542728
Target:  5'- cGUCC-CCgucGCCGCC-GGCG-GCGGCg -3'
miRNA:   3'- -CGGGuGGa--CGGCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 66068 0.66 0.64202
Target:  5'- cCCCGCggacgGCCGCCUGggcuuccacGCGggccUGCAGCg -3'
miRNA:   3'- cGGGUGga---CGGCGGAC---------UGC----ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 66760 0.67 0.572182
Target:  5'- cGCgaCGCCgcgacgGCCGCCcucggGACGgcgGCGGCg -3'
miRNA:   3'- -CGg-GUGGa-----CGGCGGa----CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 67700 0.73 0.289689
Target:  5'- uCCCGCUUGuCCGCCUGGCGccacaggcacggcGCGGCg -3'
miRNA:   3'- cGGGUGGAC-GGCGGACUGCa------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 67991 0.66 0.621995
Target:  5'- gGCCCGCCggcGCCGCggccacgGGCucgGCGGCg -3'
miRNA:   3'- -CGGGUGGa--CGGCGga-----CUGca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 69691 0.66 0.652026
Target:  5'- cGCCuCGCCgucgauggugGCCGCCgc-CGgggGCAGCa -3'
miRNA:   3'- -CGG-GUGGa---------CGGCGGacuGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 69961 0.73 0.279259
Target:  5'- aGCCCcCCgggGCCGCgCgGGCGcUGCAGCg -3'
miRNA:   3'- -CGGGuGGa--CGGCG-GaCUGC-ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 72250 0.72 0.341889
Target:  5'- uGCCCGCg-GCCGCC-GACGccgaGCGGCg -3'
miRNA:   3'- -CGGGUGgaCGGCGGaCUGCa---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 72827 0.66 0.629003
Target:  5'- cGCCCACggGCCGCUUGAacugguacuccCGUugcucgucggcgagGCGGCg -3'
miRNA:   3'- -CGGGUGgaCGGCGGACU-----------GCA--------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 73578 0.66 0.64202
Target:  5'- cGCaCCACCgucaggGCgaaGCC-GGgGUGCAGCUg -3'
miRNA:   3'- -CG-GGUGGa-----CGg--CGGaCUgCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 76891 0.71 0.372812
Target:  5'- aGCgCCGCCUGCUGCgCcGGCGagaGCGGCa -3'
miRNA:   3'- -CG-GGUGGACGGCG-GaCUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 77013 0.69 0.466154
Target:  5'- gGCCCGCgaGCCguggagcGCCagGACGagGCAGCa -3'
miRNA:   3'- -CGGGUGgaCGG-------CGGa-CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 78745 0.68 0.523371
Target:  5'- gGCCCACgUccGCCGUCUG-CGccgagGCGGCg -3'
miRNA:   3'- -CGGGUGgA--CGGCGGACuGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 81593 0.71 0.349444
Target:  5'- cGCgUCGCCgggGCCGCC-GGCGcGCAGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 82343 0.68 0.552496
Target:  5'- gGCCaCACC-GCCGCC-GugGUGUAcguGCg -3'
miRNA:   3'- -CGG-GUGGaCGGCGGaCugCACGU---CGa -5'
29367 5' -61.1 NC_006151.1 + 82664 0.73 0.285743
Target:  5'- gGCCCACCcugcgGCgCGCCgcgGGCGaggGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGa--CUGCa--CGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.