miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 139672 0.67 0.562316
Target:  5'- cGCCCGacaggcCCUGCgGCagcGGCGgcgGCAGCa -3'
miRNA:   3'- -CGGGU------GGACGgCGga-CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 49594 0.67 0.562316
Target:  5'- cGCCCcggccagcGCgCUGCCGguCCUGGCgGUGCuGCg -3'
miRNA:   3'- -CGGG--------UG-GACGGC--GGACUG-CACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 36717 0.67 0.560348
Target:  5'- aGCCCGCC-GCCGCgaGGCGgcucgauccucgGCcGCUu -3'
miRNA:   3'- -CGGGUGGaCGGCGgaCUGCa-----------CGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 85135 0.67 0.582089
Target:  5'- uGCCugCACCUGgUGCaccGCGUGCGGCa -3'
miRNA:   3'- -CGG--GUGGACgGCGgacUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 122350 0.67 0.582089
Target:  5'- gGCCaagaACCUGCCGC---ACGUGCAcggGCUc -3'
miRNA:   3'- -CGGg---UGGACGGCGgacUGCACGU---CGA- -5'
29367 5' -61.1 NC_006151.1 + 63988 0.67 0.582089
Target:  5'- aGCgCAUCU-CCGUCUG-CGUGCGGUg -3'
miRNA:   3'- -CGgGUGGAcGGCGGACuGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 60090 0.67 0.61199
Target:  5'- cGCgCCGCCgcgaaCGCCgGGCG-GCAGCg -3'
miRNA:   3'- -CG-GGUGGacg--GCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 115745 0.67 0.61199
Target:  5'- -aCCACCUugaugGCCGCCUGcuGCuGUccaGCAGCa -3'
miRNA:   3'- cgGGUGGA-----CGGCGGAC--UG-CA---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 90712 0.67 0.601999
Target:  5'- cGCCCGCC--CCGCa-GGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGacGGCGgaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 105563 0.67 0.601999
Target:  5'- cGCCCugCgcgcgcuggcgGCCGCCUucGACGcGCGcGCg -3'
miRNA:   3'- -CGGGugGa----------CGGCGGA--CUGCaCGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 65026 0.67 0.601999
Target:  5'- gGCCCACCUcguacgGCaggggGCCcGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGA------CGg----CGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 58724 0.67 0.59203
Target:  5'- cGCCC-CCgUGCCGCUc-GCGUcgcGCAGCg -3'
miRNA:   3'- -CGGGuGG-ACGGCGGacUGCA---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 52745 0.67 0.59203
Target:  5'- cGCCCugCUGCgcgcgCGCCUcGCaGcGCAGCg -3'
miRNA:   3'- -CGGGugGACG-----GCGGAcUG-CaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 101544 0.67 0.59203
Target:  5'- gGCgCGCCUG-CGCCcggcgGACGUGUAcGCg -3'
miRNA:   3'- -CGgGUGGACgGCGGa----CUGCACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 15079 0.67 0.59203
Target:  5'- gGCCC-CCUGgCGCCccGACacGCGGCg -3'
miRNA:   3'- -CGGGuGGACgGCGGa-CUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 84915 0.67 0.582089
Target:  5'- cGCCgCGCgCggcGCCGCCUccGGCGUGCucuucGGCa -3'
miRNA:   3'- -CGG-GUG-Ga--CGGCGGA--CUGCACG-----UCGa -5'
29367 5' -61.1 NC_006151.1 + 5626 0.68 0.546629
Target:  5'- gGCgCCGCC-GCCGCCgGGCGccgagaccggcccgGCGGCg -3'
miRNA:   3'- -CG-GGUGGaCGGCGGaCUGCa-------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61239 0.68 0.552496
Target:  5'- aGCCCAUCggagcGCgCGCCacgagGACGcgGCGGCa -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGa----CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 97717 0.68 0.552496
Target:  5'- gGCCCAggaGCCcCCcgagGACGUGCAGCg -3'
miRNA:   3'- -CGGGUggaCGGcGGa---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 104418 0.68 0.542728
Target:  5'- gGCCCGCgCcGCCGCCggcauggGGCGcuuCAGCUa -3'
miRNA:   3'- -CGGGUG-GaCGGCGGa------CUGCac-GUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.