miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 56186 0.69 0.457983
Target:  5'- cGCUgGCCgUGCCGCCggUGGCGcUGCcGCa -3'
miRNA:   3'- -CGGgUGG-ACGGCGG--ACUGC-ACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 98282 0.69 0.476242
Target:  5'- gGCCgACCacGCCGUCgccacgGugGUGCAGUc -3'
miRNA:   3'- -CGGgUGGa-CGGCGGa-----CugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 17962 0.69 0.44721
Target:  5'- cGCCCGCCUGCCGgCgucccacGCGGCg -3'
miRNA:   3'- -CGGGUGGACGGCgGacugca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 77013 0.69 0.466154
Target:  5'- gGCCCGCgaGCCguggagcGCCagGACGagGCAGCa -3'
miRNA:   3'- -CGGGUGgaCGG-------CGGa-CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 54293 0.69 0.448996
Target:  5'- cGCuCCACCgagGCCGCC----GUGCGGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGacugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 15915 0.69 0.485506
Target:  5'- gGCCCGCC-GCCGCCc--CGUGaGGCg -3'
miRNA:   3'- -CGGGUGGaCGGCGGacuGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 52444 0.69 0.448996
Target:  5'- cGCagCGCC-GCCGCCgUGACG-GCGGCc -3'
miRNA:   3'- -CGg-GUGGaCGGCGG-ACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 48574 0.69 0.457983
Target:  5'- aCCCugcgGCCUGCCGCCcGGgGUGC-GCc -3'
miRNA:   3'- cGGG----UGGACGGCGGaCUgCACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 92666 0.69 0.457983
Target:  5'- cGCCCugCUGCCggcgGCCgggGACGcGC-GCUc -3'
miRNA:   3'- -CGGGugGACGG----CGGa--CUGCaCGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 122550 0.69 0.467067
Target:  5'- gGCCCGCCUcGCggCGCCUGuACGccgugagcgagcUGCAGUUu -3'
miRNA:   3'- -CGGGUGGA-CG--GCGGAC-UGC------------ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 82343 0.68 0.552496
Target:  5'- gGCCaCACC-GCCGCC-GugGUGUAcguGCg -3'
miRNA:   3'- -CGG-GUGGaCGGCGGaCugCACGU---CGa -5'
29367 5' -61.1 NC_006151.1 + 5626 0.68 0.546629
Target:  5'- gGCgCCGCC-GCCGCCgGGCGccgagaccggcccgGCGGCg -3'
miRNA:   3'- -CG-GGUGGaCGGCGGaCUGCa-------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61239 0.68 0.552496
Target:  5'- aGCCCAUCggagcGCgCGCCacgagGACGcgGCGGCa -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGa----CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 97717 0.68 0.552496
Target:  5'- gGCCCAggaGCCcCCcgagGACGUGCAGCg -3'
miRNA:   3'- -CGGGUggaCGGcGGa---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 11041 0.68 0.512838
Target:  5'- gGCCgGCCggggGCCcgGCCUGGacgcgggccacacUGUGCGGCg -3'
miRNA:   3'- -CGGgUGGa---CGG--CGGACU-------------GCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 123888 0.68 0.504285
Target:  5'- cGCUCGCC-GCgGCCccGcCGUGCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCGGa-CuGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 129520 0.68 0.513792
Target:  5'- -gCCGCUUGCCGCC-GACGggGgGGCc -3'
miRNA:   3'- cgGGUGGACGGCGGaCUGCa-CgUCGa -5'
29367 5' -61.1 NC_006151.1 + 129679 0.68 0.513792
Target:  5'- cGCgCACCguccgGCCGCCgugGACc-GCGGCg -3'
miRNA:   3'- -CGgGUGGa----CGGCGGa--CUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 113765 0.68 0.504285
Target:  5'- aGCCCACUcccgaGCCGCCUuccugcgcGACGcacacgcgcugcUGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CGGCGGA--------CUGC------------ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 20307 0.68 0.504285
Target:  5'- cGCCCGCC-GUgGCgUUGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCG-GACUGCaCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.