miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 99317 0.71 0.349444
Target:  5'- cGCgCGCC--CCGCCUGACGgacgcGCAGCg -3'
miRNA:   3'- -CGgGUGGacGGCGGACUGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 81593 0.71 0.349444
Target:  5'- cGCgUCGCCgggGCCGCC-GGCGcGCAGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 118342 0.71 0.364906
Target:  5'- cGCCCGCCcucucGCgCGCCUG-CGagGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGACuGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 119364 0.71 0.388971
Target:  5'- -aCCACCUGgUGa-UGGCGUGCGGCUu -3'
miRNA:   3'- cgGGUGGACgGCggACUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 138577 0.7 0.440106
Target:  5'- cGCCCGCCUGCCccacCCcGuCGUGUAcGCg -3'
miRNA:   3'- -CGGGUGGACGGc---GGaCuGCACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 101732 0.7 0.405581
Target:  5'- aCCCGauggcCCUGCCGCCgGACccgGCGGCc -3'
miRNA:   3'- cGGGU-----GGACGGCGGaCUGca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 109161 0.7 0.422632
Target:  5'- uCCCGCC-GCCGCagccUGUGCAGCUg -3'
miRNA:   3'- cGGGUGGaCGGCGgacuGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 21571 0.7 0.431317
Target:  5'- aGCCCGCCgaggGCCGCgcggggucgaUGGCGUaCGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGg---------ACUGCAcGUCGa -5'
29367 5' -61.1 NC_006151.1 + 138759 0.7 0.403061
Target:  5'- cGCCUACCUGUgggacgugcacuuuCGCCUGGCGgccgucgcGUGGCUc -3'
miRNA:   3'- -CGGGUGGACG--------------GCGGACUGCa-------CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 58402 0.7 0.405581
Target:  5'- aGCCgGCCaugGCgCGCagcugGGCGUGCGGCa -3'
miRNA:   3'- -CGGgUGGa--CG-GCGga---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 57609 0.7 0.440106
Target:  5'- gGCCUcgGCCgcgGCCGCCUcGACG-GCGcGCg -3'
miRNA:   3'- -CGGG--UGGa--CGGCGGA-CUGCaCGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 38068 0.7 0.422632
Target:  5'- gGCCCGCCUGCC-UCgagGAgGUGaCGGCc -3'
miRNA:   3'- -CGGGUGGACGGcGGa--CUgCAC-GUCGa -5'
29367 5' -61.1 NC_006151.1 + 109303 0.7 0.422632
Target:  5'- -gCgGCCcGCCGCCUcGGCG-GCAGCa -3'
miRNA:   3'- cgGgUGGaCGGCGGA-CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 106183 0.7 0.414053
Target:  5'- cGCgCACCcGCCGCUggagccGGCGgUGCGGCUc -3'
miRNA:   3'- -CGgGUGGaCGGCGGa-----CUGC-ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 54293 0.69 0.448996
Target:  5'- cGCuCCACCgagGCCGCC----GUGCGGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGacugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 62035 0.69 0.457983
Target:  5'- aGCCCcCCgcugcGCCGCgUGGCgGUGCAcGCg -3'
miRNA:   3'- -CGGGuGGa----CGGCGgACUG-CACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 17962 0.69 0.44721
Target:  5'- cGCCCGCCUGCCGgCgucccacGCGGCg -3'
miRNA:   3'- -CGGGUGGACGGCgGacugca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 77013 0.69 0.466154
Target:  5'- gGCCCGCgaGCCguggagcGCCagGACGagGCAGCa -3'
miRNA:   3'- -CGGGUGgaCGG-------CGGa-CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 125386 0.69 0.457983
Target:  5'- gGCCgCAUCgcgGCCGCCUG--GUGCgAGCUg -3'
miRNA:   3'- -CGG-GUGGa--CGGCGGACugCACG-UCGA- -5'
29367 5' -61.1 NC_006151.1 + 56186 0.69 0.457983
Target:  5'- cGCUgGCCgUGCCGCCggUGGCGcUGCcGCa -3'
miRNA:   3'- -CGGgUGG-ACGGCGG--ACUGC-ACGuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.