miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 125386 0.69 0.457983
Target:  5'- gGCCgCAUCgcgGCCGCCUG--GUGCgAGCUg -3'
miRNA:   3'- -CGG-GUGGa--CGGCGGACugCACG-UCGA- -5'
29367 5' -61.1 NC_006151.1 + 62035 0.69 0.457983
Target:  5'- aGCCCcCCgcugcGCCGCgUGGCgGUGCAcGCg -3'
miRNA:   3'- -CGGGuGGa----CGGCGgACUG-CACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 77013 0.69 0.466154
Target:  5'- gGCCCGCgaGCCguggagcGCCagGACGagGCAGCa -3'
miRNA:   3'- -CGGGUGgaCGG-------CGGa-CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 122550 0.69 0.467067
Target:  5'- gGCCCGCCUcGCggCGCCUGuACGccgugagcgagcUGCAGUUu -3'
miRNA:   3'- -CGGGUGGA-CG--GCGGAC-UGC------------ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 32937 0.69 0.467067
Target:  5'- cCCCGCUc-CCGCCUGugGUGCcGUg -3'
miRNA:   3'- cGGGUGGacGGCGGACugCACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 98282 0.69 0.476242
Target:  5'- gGCCgACCacGCCGUCgccacgGugGUGCAGUc -3'
miRNA:   3'- -CGGgUGGa-CGGCGGa-----CugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 15915 0.69 0.485506
Target:  5'- gGCCCGCC-GCCGCCc--CGUGaGGCg -3'
miRNA:   3'- -CGGGUGGaCGGCGGacuGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 95915 0.69 0.485506
Target:  5'- uGCCgCGCgUGCaguCGCCcgagGGCGUGCGGUUg -3'
miRNA:   3'- -CGG-GUGgACG---GCGGa---CUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 106980 0.69 0.494855
Target:  5'- cCCCAUCgagaacGCgUGCCUGGCGccGCAGCUg -3'
miRNA:   3'- cGGGUGGa-----CG-GCGGACUGCa-CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 49145 0.69 0.494855
Target:  5'- cGCCCGCCcacgGCUGCCUGGag-GCcugGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGGACUgcaCG---UCGa -5'
29367 5' -61.1 NC_006151.1 + 123888 0.68 0.504285
Target:  5'- cGCUCGCC-GCgGCCccGcCGUGCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCGGa-CuGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 20307 0.68 0.504285
Target:  5'- cGCCCGCC-GUgGCgUUGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCG-GACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 113765 0.68 0.504285
Target:  5'- aGCCCACUcccgaGCCGCCUuccugcgcGACGcacacgcgcugcUGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CGGCGGA--------CUGC------------ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 11041 0.68 0.512838
Target:  5'- gGCCgGCCggggGCCcgGCCUGGacgcgggccacacUGUGCGGCg -3'
miRNA:   3'- -CGGgUGGa---CGG--CGGACU-------------GCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 129679 0.68 0.513792
Target:  5'- cGCgCACCguccgGCCGCCgugGACc-GCGGCg -3'
miRNA:   3'- -CGgGUGGa----CGGCGGa--CUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 129520 0.68 0.513792
Target:  5'- -gCCGCUUGCCGCC-GACGggGgGGCc -3'
miRNA:   3'- cgGGUGGACGGCGGaCUGCa-CgUCGa -5'
29367 5' -61.1 NC_006151.1 + 7101 0.68 0.523371
Target:  5'- gGCCCGCuCUGCgGCCaucuUGGCc-GCGGCg -3'
miRNA:   3'- -CGGGUG-GACGgCGG----ACUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 104550 0.68 0.523371
Target:  5'- gGCCgAgCUgGCCGCCcugGGCGcGCGGCg -3'
miRNA:   3'- -CGGgUgGA-CGGCGGa--CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 58568 0.68 0.523371
Target:  5'- -gCCGCC-GCCGCCcgccGGCGUcGCGGCc -3'
miRNA:   3'- cgGGUGGaCGGCGGa---CUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61445 0.68 0.523371
Target:  5'- cGCCCGCCcgcguccGCCGCC--AUGUGCGGg- -3'
miRNA:   3'- -CGGGUGGa------CGGCGGacUGCACGUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.