miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 78745 0.68 0.523371
Target:  5'- gGCCCACgUccGCCGUCUG-CGccgagGCGGCg -3'
miRNA:   3'- -CGGGUGgA--CGGCGGACuGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61445 0.68 0.523371
Target:  5'- cGCCCGCCcgcguccGCCGCC--AUGUGCGGg- -3'
miRNA:   3'- -CGGGUGGa------CGGCGGacUGCACGUCga -5'
29367 5' -61.1 NC_006151.1 + 117637 0.68 0.531084
Target:  5'- uGCCCACgUGCaCGCCgcgcugcuccggGGCGUccaggcaccGCGGCg -3'
miRNA:   3'- -CGGGUGgACG-GCGGa-----------CUGCA---------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 104418 0.68 0.542728
Target:  5'- gGCCCGCgCcGCCGCCggcauggGGCGcuuCAGCUa -3'
miRNA:   3'- -CGGGUG-GaCGGCGGa------CUGCac-GUCGA- -5'
29367 5' -61.1 NC_006151.1 + 65767 0.68 0.542728
Target:  5'- cGUCC-CCgucGCCGCC-GGCG-GCGGCg -3'
miRNA:   3'- -CGGGuGGa--CGGCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 107057 0.68 0.542728
Target:  5'- aGCCgGCCUGCCucguGCUggugGACucGCAGCUg -3'
miRNA:   3'- -CGGgUGGACGG----CGGa---CUGcaCGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 5626 0.68 0.546629
Target:  5'- gGCgCCGCC-GCCGCCgGGCGccgagaccggcccgGCGGCg -3'
miRNA:   3'- -CG-GGUGGaCGGCGGaCUGCa-------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 82343 0.68 0.552496
Target:  5'- gGCCaCACC-GCCGCC-GugGUGUAcguGCg -3'
miRNA:   3'- -CGG-GUGGaCGGCGGaCugCACGU---CGa -5'
29367 5' -61.1 NC_006151.1 + 61239 0.68 0.552496
Target:  5'- aGCCCAUCggagcGCgCGCCacgagGACGcgGCGGCa -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGa----CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 97717 0.68 0.552496
Target:  5'- gGCCCAggaGCCcCCcgagGACGUGCAGCg -3'
miRNA:   3'- -CGGGUggaCGGcGGa---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 36717 0.67 0.560348
Target:  5'- aGCCCGCC-GCCGCgaGGCGgcucgauccucgGCcGCUu -3'
miRNA:   3'- -CGGGUGGaCGGCGgaCUGCa-----------CGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 139672 0.67 0.562316
Target:  5'- cGCCCGacaggcCCUGCgGCagcGGCGgcgGCAGCa -3'
miRNA:   3'- -CGGGU------GGACGgCGga-CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 132425 0.67 0.562316
Target:  5'- uGCCCucgUCgcgGCgCGCCUGcGCGUGCAGgUa -3'
miRNA:   3'- -CGGGu--GGa--CG-GCGGAC-UGCACGUCgA- -5'
29367 5' -61.1 NC_006151.1 + 49594 0.67 0.562316
Target:  5'- cGCCCcggccagcGCgCUGCCGguCCUGGCgGUGCuGCg -3'
miRNA:   3'- -CGGG--------UG-GACGGC--GGACUG-CACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 107702 0.67 0.570205
Target:  5'- aGCCCGCCgccggcaccaagGCCGCCgcGGCccccaaGCAGCa -3'
miRNA:   3'- -CGGGUGGa-----------CGGCGGa-CUGca----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 66760 0.67 0.572182
Target:  5'- cGCgaCGCCgcgacgGCCGCCcucggGACGgcgGCGGCg -3'
miRNA:   3'- -CGg-GUGGa-----CGGCGGa----CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 103892 0.67 0.572182
Target:  5'- cGCgCCACCUGgCGCUggaggUGGCGcgcGCGGCc -3'
miRNA:   3'- -CG-GGUGGACgGCGG-----ACUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 9037 0.67 0.572182
Target:  5'- cGCCCGCCggGgCGCCccGCGUGCuccgggGGCg -3'
miRNA:   3'- -CGGGUGGa-CgGCGGacUGCACG------UCGa -5'
29367 5' -61.1 NC_006151.1 + 57870 0.67 0.572182
Target:  5'- cGCgCGCCccGCCGgCaGACGUcGCAGCg -3'
miRNA:   3'- -CGgGUGGa-CGGCgGaCUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 92045 0.67 0.572182
Target:  5'- cGCCCgcuGCCUGCugCGCCUGcuGCGcaUGCuGCa -3'
miRNA:   3'- -CGGG---UGGACG--GCGGAC--UGC--ACGuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.