Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 5' | -61.1 | NC_006151.1 | + | 104879 | 0.66 | 0.621995 |
Target: 5'- cGCCacgCGCCUGCUGCgCgagguggugGACGcgGCGGCg -3' miRNA: 3'- -CGG---GUGGACGGCG-Ga--------CUGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 104550 | 0.68 | 0.523371 |
Target: 5'- gGCCgAgCUgGCCGCCcugGGCGcGCGGCg -3' miRNA: 3'- -CGGgUgGA-CGGCGGa--CUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 104418 | 0.68 | 0.542728 |
Target: 5'- gGCCCGCgCcGCCGCCggcauggGGCGcuuCAGCUa -3' miRNA: 3'- -CGGGUG-GaCGGCGGa------CUGCac-GUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 104284 | 0.73 | 0.266644 |
Target: 5'- gGCCCGCC-GCUGCa-GGCGcUGCAGCg -3' miRNA: 3'- -CGGGUGGaCGGCGgaCUGC-ACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 104250 | 0.66 | 0.641019 |
Target: 5'- cCCgCACCUGCCcgagaacGCC-GGCGcgGCGGCg -3' miRNA: 3'- cGG-GUGGACGG-------CGGaCUGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 103892 | 0.67 | 0.572182 |
Target: 5'- cGCgCCACCUGgCGCUggaggUGGCGcgcGCGGCc -3' miRNA: 3'- -CG-GGUGGACgGCGG-----ACUGCa--CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 103806 | 0.66 | 0.671982 |
Target: 5'- gGCCgCGCUgucgGCgGCCgUGGCG-GCGGCc -3' miRNA: 3'- -CGG-GUGGa---CGgCGG-ACUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 101732 | 0.7 | 0.405581 |
Target: 5'- aCCCGauggcCCUGCCGCCgGACccgGCGGCc -3' miRNA: 3'- cGGGU-----GGACGGCGGaCUGca-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 101544 | 0.67 | 0.59203 |
Target: 5'- gGCgCGCCUG-CGCCcggcgGACGUGUAcGCg -3' miRNA: 3'- -CGgGUGGACgGCGGa----CUGCACGU-CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 99317 | 0.71 | 0.349444 |
Target: 5'- cGCgCGCC--CCGCCUGACGgacgcGCAGCg -3' miRNA: 3'- -CGgGUGGacGGCGGACUGCa----CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 98440 | 0.72 | 0.327137 |
Target: 5'- uGCUCGCCgagaaccugGCCgGCCUGGCGcUGUGGCg -3' miRNA: 3'- -CGGGUGGa--------CGG-CGGACUGC-ACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 98282 | 0.69 | 0.476242 |
Target: 5'- gGCCgACCacGCCGUCgccacgGugGUGCAGUc -3' miRNA: 3'- -CGGgUGGa-CGGCGGa-----CugCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 97717 | 0.68 | 0.552496 |
Target: 5'- gGCCCAggaGCCcCCcgagGACGUGCAGCg -3' miRNA: 3'- -CGGGUggaCGGcGGa---CUGCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 95915 | 0.69 | 0.485506 |
Target: 5'- uGCCgCGCgUGCaguCGCCcgagGGCGUGCGGUUg -3' miRNA: 3'- -CGG-GUGgACG---GCGGa---CUGCACGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 92666 | 0.69 | 0.457983 |
Target: 5'- cGCCCugCUGCCggcgGCCgggGACGcGC-GCUc -3' miRNA: 3'- -CGGGugGACGG----CGGa--CUGCaCGuCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 92045 | 0.67 | 0.572182 |
Target: 5'- cGCCCgcuGCCUGCugCGCCUGcuGCGcaUGCuGCa -3' miRNA: 3'- -CGGG---UGGACG--GCGGAC--UGC--ACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 91481 | 0.66 | 0.64202 |
Target: 5'- -aCCugCUcGCCGCgcacgCUGGCGUGCaccAGCa -3' miRNA: 3'- cgGGugGA-CGGCG-----GACUGCACG---UCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 90712 | 0.67 | 0.601999 |
Target: 5'- cGCCCGCC--CCGCa-GGCG-GCGGCg -3' miRNA: 3'- -CGGGUGGacGGCGgaCUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 87441 | 0.66 | 0.662016 |
Target: 5'- uGCCCGCC-GCCGCC--GCG-GCcGCc -3' miRNA: 3'- -CGGGUGGaCGGCGGacUGCaCGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 86537 | 0.72 | 0.305904 |
Target: 5'- cGCCuCGCCcgagGCCGCCgUGGCGccguuccgGCAGCUc -3' miRNA: 3'- -CGG-GUGGa---CGGCGG-ACUGCa-------CGUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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