miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 120739 0.66 0.671982
Target:  5'- cGCCCgcgggACCcgGCCgcgucaugGCCUGG-GUGCGGCg -3'
miRNA:   3'- -CGGG-----UGGa-CGG--------CGGACUgCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 119364 0.71 0.388971
Target:  5'- -aCCACCUGgUGa-UGGCGUGCGGCUu -3'
miRNA:   3'- cgGGUGGACgGCggACUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 118713 0.79 0.109881
Target:  5'- gGCCCGCuCUGCCGCCUGcugcacggcuACGUGCugGGCc -3'
miRNA:   3'- -CGGGUG-GACGGCGGAC----------UGCACG--UCGa -5'
29367 5' -61.1 NC_006151.1 + 118342 0.71 0.364906
Target:  5'- cGCCCGCCcucucGCgCGCCUG-CGagGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGACuGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 117637 0.68 0.531084
Target:  5'- uGCCCACgUGCaCGCCgcgcugcuccggGGCGUccaggcaccGCGGCg -3'
miRNA:   3'- -CGGGUGgACG-GCGGa-----------CUGCA---------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 115745 0.67 0.61199
Target:  5'- -aCCACCUugaugGCCGCCUGcuGCuGUccaGCAGCa -3'
miRNA:   3'- cgGGUGGA-----CGGCGGAC--UG-CA---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 114174 0.71 0.349444
Target:  5'- gGCCCuCgUGCUgGCCU-ACGUGCAGCa -3'
miRNA:   3'- -CGGGuGgACGG-CGGAcUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 113765 0.68 0.504285
Target:  5'- aGCCCACUcccgaGCCGCCUuccugcgcGACGcacacgcgcugcUGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CGGCGGA--------CUGC------------ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 112833 0.66 0.632007
Target:  5'- cGCCacgCGCgUGCucaCGCUcgugGACGUGCAGCg -3'
miRNA:   3'- -CGG---GUGgACG---GCGGa---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 110182 0.66 0.671982
Target:  5'- -gCCGCgUGCCGCCUGauaGCGcGCcGCc -3'
miRNA:   3'- cgGGUGgACGGCGGAC---UGCaCGuCGa -5'
29367 5' -61.1 NC_006151.1 + 109893 0.72 0.312862
Target:  5'- cGCCCAuCCU-CCGCCgcGGCG-GCAGCa -3'
miRNA:   3'- -CGGGU-GGAcGGCGGa-CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 109509 0.66 0.671982
Target:  5'- cUCCGCCgcUGCCGCCgcaGcCGUcucaGCAGCg -3'
miRNA:   3'- cGGGUGG--ACGGCGGa--CuGCA----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 109303 0.7 0.422632
Target:  5'- -gCgGCCcGCCGCCUcGGCG-GCAGCa -3'
miRNA:   3'- cgGgUGGaCGGCGGA-CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 109161 0.7 0.422632
Target:  5'- uCCCGCC-GCCGCagccUGUGCAGCUg -3'
miRNA:   3'- cGGGUGGaCGGCGgacuGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 107702 0.67 0.570205
Target:  5'- aGCCCGCCgccggcaccaagGCCGCCgcGGCccccaaGCAGCa -3'
miRNA:   3'- -CGGGUGGa-----------CGGCGGa-CUGca----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 107519 0.66 0.652026
Target:  5'- cGCCCACgCUcCCGCCguUGGCcccgGCGGCc -3'
miRNA:   3'- -CGGGUG-GAcGGCGG--ACUGca--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 107057 0.68 0.542728
Target:  5'- aGCCgGCCUGCCucguGCUggugGACucGCAGCUg -3'
miRNA:   3'- -CGGgUGGACGG----CGGa---CUGcaCGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 106980 0.69 0.494855
Target:  5'- cCCCAUCgagaacGCgUGCCUGGCGccGCAGCUg -3'
miRNA:   3'- cGGGUGGa-----CG-GCGGACUGCa-CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 106183 0.7 0.414053
Target:  5'- cGCgCACCcGCCGCUggagccGGCGgUGCGGCUc -3'
miRNA:   3'- -CGgGUGGaCGGCGGa-----CUGC-ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 105563 0.67 0.601999
Target:  5'- cGCCCugCgcgcgcuggcgGCCGCCUucGACGcGCGcGCg -3'
miRNA:   3'- -CGGGugGa----------CGGCGGA--CUGCaCGU-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.