miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 140507 1.09 0.000756
Target:  5'- cGCCCACCUGCCGCCUGACGUGCAGCUa -3'
miRNA:   3'- -CGGGUGGACGGCGGACUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 140295 0.71 0.372812
Target:  5'- cGUgCGCCggcGCCGCCUgcggGACGUGC-GCUg -3'
miRNA:   3'- -CGgGUGGa--CGGCGGA----CUGCACGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 140022 0.72 0.299065
Target:  5'- gGCCgACCUGCacCGCCuguuUGAgGUGCGGCc -3'
miRNA:   3'- -CGGgUGGACG--GCGG----ACUgCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 139672 0.67 0.562316
Target:  5'- cGCCCGacaggcCCUGCgGCagcGGCGgcgGCAGCa -3'
miRNA:   3'- -CGGGU------GGACGgCGga-CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 138759 0.7 0.403061
Target:  5'- cGCCUACCUGUgggacgugcacuuuCGCCUGGCGgccgucgcGUGGCUc -3'
miRNA:   3'- -CGGGUGGACG--------------GCGGACUGCa-------CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 138577 0.7 0.440106
Target:  5'- cGCCCGCCUGCCccacCCcGuCGUGUAcGCg -3'
miRNA:   3'- -CGGGUGGACGGc---GGaCuGCACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 136953 0.66 0.626
Target:  5'- cGCCguCCUgcGCCGCCUGcuggagcuggccgccGCGccggGCGGCg -3'
miRNA:   3'- -CGGguGGA--CGGCGGAC---------------UGCa---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 133472 0.66 0.631006
Target:  5'- gGCCCGCgagGCgGCCgcgGGCGUcaccuugGCGGCg -3'
miRNA:   3'- -CGGGUGga-CGgCGGa--CUGCA-------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 133253 0.66 0.621995
Target:  5'- gGCCUcgcacgGCCUGUCGCUgaaGGCGagccgGCGGCg -3'
miRNA:   3'- -CGGG------UGGACGGCGGa--CUGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 132425 0.67 0.562316
Target:  5'- uGCCCucgUCgcgGCgCGCCUGcGCGUGCAGgUa -3'
miRNA:   3'- -CGGGu--GGa--CG-GCGGAC-UGCACGUCgA- -5'
29367 5' -61.1 NC_006151.1 + 130640 0.71 0.372812
Target:  5'- aGCgCCGCCgagGCCGCCUGcgGCGUGaacguCAGUg -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGAC--UGCAC-----GUCGa -5'
29367 5' -61.1 NC_006151.1 + 129679 0.68 0.513792
Target:  5'- cGCgCACCguccgGCCGCCgugGACc-GCGGCg -3'
miRNA:   3'- -CGgGUGGa----CGGCGGa--CUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 129520 0.68 0.513792
Target:  5'- -gCCGCUUGCCGCC-GACGggGgGGCc -3'
miRNA:   3'- cgGGUGGACGGCGGaCUGCa-CgUCGa -5'
29367 5' -61.1 NC_006151.1 + 125386 0.69 0.457983
Target:  5'- gGCCgCAUCgcgGCCGCCUG--GUGCgAGCUg -3'
miRNA:   3'- -CGG-GUGGa--CGGCGGACugCACG-UCGA- -5'
29367 5' -61.1 NC_006151.1 + 124118 0.77 0.152801
Target:  5'- uGCCCGCC-GCCGuCCggcuccacgGugGUGCGGCUg -3'
miRNA:   3'- -CGGGUGGaCGGC-GGa--------CugCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 123888 0.68 0.504285
Target:  5'- cGCUCGCC-GCgGCCccGcCGUGCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCGGa-CuGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 122550 0.69 0.467067
Target:  5'- gGCCCGCCUcGCggCGCCUGuACGccgugagcgagcUGCAGUUu -3'
miRNA:   3'- -CGGGUGGA-CG--GCGGAC-UGC------------ACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 122412 0.66 0.671982
Target:  5'- cGCUCGCCgccguggacGCCGCCgaggcccgggaGGCGgagGCGGCg -3'
miRNA:   3'- -CGGGUGGa--------CGGCGGa----------CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 122350 0.67 0.582089
Target:  5'- gGCCaagaACCUGCCGC---ACGUGCAcggGCUc -3'
miRNA:   3'- -CGGg---UGGACGGCGgacUGCACGU---CGA- -5'
29367 5' -61.1 NC_006151.1 + 120900 0.66 0.621995
Target:  5'- cGCCCGCUgguggUGCUggGCCUgGGCGU-CAGCa -3'
miRNA:   3'- -CGGGUGG-----ACGG--CGGA-CUGCAcGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.