miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 140507 1.09 0.000756
Target:  5'- cGCCCACCUGCCGCCUGACGUGCAGCUa -3'
miRNA:   3'- -CGGGUGGACGGCGGACUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 118713 0.79 0.109881
Target:  5'- gGCCCGCuCUGCCGCCUGcugcacggcuACGUGCugGGCc -3'
miRNA:   3'- -CGGGUG-GACGGCGGAC----------UGCACG--UCGa -5'
29367 5' -61.1 NC_006151.1 + 124118 0.77 0.152801
Target:  5'- uGCCCGCC-GCCGuCCggcuccacgGugGUGCGGCUg -3'
miRNA:   3'- -CGGGUGGaCGGC-GGa--------CugCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 39018 0.74 0.254494
Target:  5'- cGCuCCGCCgccgcGCCGCCUGGa-UGCGGCa -3'
miRNA:   3'- -CG-GGUGGa----CGGCGGACUgcACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 104284 0.73 0.266644
Target:  5'- gGCCCGCC-GCUGCa-GGCGcUGCAGCg -3'
miRNA:   3'- -CGGGUGGaCGGCGgaCUGC-ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 69961 0.73 0.279259
Target:  5'- aGCCCcCCgggGCCGCgCgGGCGcUGCAGCg -3'
miRNA:   3'- -CGGGuGGa--CGGCG-GaCUGC-ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 82664 0.73 0.285743
Target:  5'- gGCCCACCcugcgGCgCGCCgcgGGCGaggGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGa--CUGCa--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 67700 0.73 0.289689
Target:  5'- uCCCGCUUGuCCGCCUGGCGccacaggcacggcGCGGCg -3'
miRNA:   3'- cGGGUGGAC-GGCGGACUGCa------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 140022 0.72 0.299065
Target:  5'- gGCCgACCUGCacCGCCuguuUGAgGUGCGGCc -3'
miRNA:   3'- -CGGgUGGACG--GCGG----ACUgCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 86537 0.72 0.305904
Target:  5'- cGCCuCGCCcgagGCCGCCgUGGCGccguuccgGCAGCUc -3'
miRNA:   3'- -CGG-GUGGa---CGGCGG-ACUGCa-------CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 109893 0.72 0.312862
Target:  5'- cGCCCAuCCU-CCGCCgcGGCG-GCAGCa -3'
miRNA:   3'- -CGGGU-GGAcGGCGGa-CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 98440 0.72 0.327137
Target:  5'- uGCUCGCCgagaaccugGCCgGCCUGGCGcUGUGGCg -3'
miRNA:   3'- -CGGGUGGa--------CGG-CGGACUGC-ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 55586 0.72 0.341889
Target:  5'- cGCgCUACgUGCCGCCguacgagucgGACGUGgAGCg -3'
miRNA:   3'- -CG-GGUGgACGGCGGa---------CUGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 72250 0.72 0.341889
Target:  5'- uGCCCGCg-GCCGCC-GACGccgaGCGGCg -3'
miRNA:   3'- -CGGGUGgaCGGCGGaCUGCa---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 81593 0.71 0.349444
Target:  5'- cGCgUCGCCgggGCCGCC-GGCGcGCAGCa -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 99317 0.71 0.349444
Target:  5'- cGCgCGCC--CCGCCUGACGgacgcGCAGCg -3'
miRNA:   3'- -CGgGUGGacGGCGGACUGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 3875 0.71 0.349444
Target:  5'- cGCCCGCC-GCCGCC-GGCGccgGC-GCUg -3'
miRNA:   3'- -CGGGUGGaCGGCGGaCUGCa--CGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 114174 0.71 0.349444
Target:  5'- gGCCCuCgUGCUgGCCU-ACGUGCAGCa -3'
miRNA:   3'- -CGGGuGgACGG-CGGAcUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 118342 0.71 0.364906
Target:  5'- cGCCCGCCcucucGCgCGCCUG-CGagGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CG-GCGGACuGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 130640 0.71 0.372812
Target:  5'- aGCgCCGCCgagGCCGCCUGcgGCGUGaacguCAGUg -3'
miRNA:   3'- -CG-GGUGGa--CGGCGGAC--UGCAC-----GUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.