miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 3875 0.71 0.349444
Target:  5'- cGCCCGCC-GCCGCC-GGCGccgGC-GCUg -3'
miRNA:   3'- -CGGGUGGaCGGCGGaCUGCa--CGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 5626 0.68 0.546629
Target:  5'- gGCgCCGCC-GCCGCCgGGCGccgagaccggcccgGCGGCg -3'
miRNA:   3'- -CG-GGUGGaCGGCGGaCUGCa-------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 7101 0.68 0.523371
Target:  5'- gGCCCGCuCUGCgGCCaucuUGGCc-GCGGCg -3'
miRNA:   3'- -CGGGUG-GACGgCGG----ACUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 9037 0.67 0.572182
Target:  5'- cGCCCGCCggGgCGCCccGCGUGCuccgggGGCg -3'
miRNA:   3'- -CGGGUGGa-CgGCGGacUGCACG------UCGa -5'
29367 5' -61.1 NC_006151.1 + 11041 0.68 0.512838
Target:  5'- gGCCgGCCggggGCCcgGCCUGGacgcgggccacacUGUGCGGCg -3'
miRNA:   3'- -CGGgUGGa---CGG--CGGACU-------------GCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 11686 0.66 0.671982
Target:  5'- cGCCCGaCgggGCCGCggGacggcGCGUGCGGCg -3'
miRNA:   3'- -CGGGUgGa--CGGCGgaC-----UGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 15079 0.67 0.59203
Target:  5'- gGCCC-CCUGgCGCCccGACacGCGGCg -3'
miRNA:   3'- -CGGGuGGACgGCGGa-CUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 15915 0.69 0.485506
Target:  5'- gGCCCGCC-GCCGCCc--CGUGaGGCg -3'
miRNA:   3'- -CGGGUGGaCGGCGGacuGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 17962 0.69 0.44721
Target:  5'- cGCCCGCCUGCCGgCgucccacGCGGCg -3'
miRNA:   3'- -CGGGUGGACGGCgGacugca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 19342 0.66 0.662016
Target:  5'- gGCCCGCg-GCC-CCgagGcguCGUGCAGCg -3'
miRNA:   3'- -CGGGUGgaCGGcGGa--Cu--GCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 20307 0.68 0.504285
Target:  5'- cGCCCGCC-GUgGCgUUGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCG-GACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 21571 0.7 0.431317
Target:  5'- aGCCCGCCgaggGCCGCgcggggucgaUGGCGUaCGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGg---------ACUGCAcGUCGa -5'
29367 5' -61.1 NC_006151.1 + 32937 0.69 0.467067
Target:  5'- cCCCGCUc-CCGCCUGugGUGCcGUg -3'
miRNA:   3'- cGGGUGGacGGCGGACugCACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 36717 0.67 0.560348
Target:  5'- aGCCCGCC-GCCGCgaGGCGgcucgauccucgGCcGCUu -3'
miRNA:   3'- -CGGGUGGaCGGCGgaCUGCa-----------CGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 37017 0.66 0.671982
Target:  5'- gGCCC-CC-GCCGCCgc-CGcGCGGCg -3'
miRNA:   3'- -CGGGuGGaCGGCGGacuGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 38068 0.7 0.422632
Target:  5'- gGCCCGCCUGCC-UCgagGAgGUGaCGGCc -3'
miRNA:   3'- -CGGGUGGACGGcGGa--CUgCAC-GUCGa -5'
29367 5' -61.1 NC_006151.1 + 38225 0.71 0.388971
Target:  5'- cGCCCGCgagGCCGCCUGgaccuACGccGCGGCc -3'
miRNA:   3'- -CGGGUGga-CGGCGGAC-----UGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 38332 0.68 0.523371
Target:  5'- cGCCCgGCCUGCCcccGCuCUGGCccgaGCAGCc -3'
miRNA:   3'- -CGGG-UGGACGG---CG-GACUGca--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 38790 0.66 0.64202
Target:  5'- cGCCCGCUcgggcccaUGCCcgagcaccccgcGCCcGACG-GCGGCUu -3'
miRNA:   3'- -CGGGUGG--------ACGG------------CGGaCUGCaCGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 39018 0.74 0.254494
Target:  5'- cGCuCCGCCgccgcGCCGCCUGGa-UGCGGCa -3'
miRNA:   3'- -CG-GGUGGa----CGGCGGACUgcACGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.