miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 3' -58.7 NC_006151.1 + 135469 0.68 0.67987
Target:  5'- uGCGCgccagCGUG-UCCGCGcGGGCCaggcggcgcgcGGCCUc -3'
miRNA:   3'- -UGCGa----GUACaAGGUGC-CCCGG-----------CUGGA- -5'
29368 3' -58.7 NC_006151.1 + 69819 0.69 0.598266
Target:  5'- gGCGCUCGccgUCCACGuuguagcgcgugcGGGCCGGCa- -3'
miRNA:   3'- -UGCGAGUacaAGGUGC-------------CCCGGCUGga -5'
29368 3' -58.7 NC_006151.1 + 99253 0.69 0.589227
Target:  5'- gGCGCUCGUGa-CCGCGGGcuucacgcGCCG-CCa -3'
miRNA:   3'- -UGCGAGUACaaGGUGCCC--------CGGCuGGa -5'
29368 3' -58.7 NC_006151.1 + 57506 0.7 0.569233
Target:  5'- cGCGCUCGg---CCGCGGcGGCggCGGCCg -3'
miRNA:   3'- -UGCGAGUacaaGGUGCC-CCG--GCUGGa -5'
29368 3' -58.7 NC_006151.1 + 102864 0.7 0.569233
Target:  5'- aGCGCUuccgCGUGgccaacgCCGCGGuGGCgGGCCUg -3'
miRNA:   3'- -UGCGA----GUACaa-----GGUGCC-CCGgCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 50869 0.7 0.549412
Target:  5'- cGCGCcCccGgaccccgUCC-CGGGGCCGGCCg -3'
miRNA:   3'- -UGCGaGuaCa------AGGuGCCCCGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 46707 0.71 0.482034
Target:  5'- uGCGCagCAUGgugCCucgggggcCGGGGCCGGCCc -3'
miRNA:   3'- -UGCGa-GUACaa-GGu-------GCCCCGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 100275 0.72 0.46351
Target:  5'- cCGCuUCGUcUUCCGCGGGcGCaCGGCCUc -3'
miRNA:   3'- uGCG-AGUAcAAGGUGCCC-CG-GCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 2102 0.72 0.445364
Target:  5'- -gGCcCGagcGggCCGCGGGGCCGGCCg -3'
miRNA:   3'- ugCGaGUa--CaaGGUGCCCCGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 38105 0.72 0.424126
Target:  5'- cGCGCUCcgcgacgcgaUCCcCGGGGCCGGCCc -3'
miRNA:   3'- -UGCGAGuaca------AGGuGCCCCGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 19271 0.72 0.418911
Target:  5'- -gGCUCGUGgcgCGCGGGGCCcACCg -3'
miRNA:   3'- ugCGAGUACaagGUGCCCCGGcUGGa -5'
29368 3' -58.7 NC_006151.1 + 37303 0.73 0.377017
Target:  5'- uCGCUCAUGgcCgACGGGcccccGCCGACCg -3'
miRNA:   3'- uGCGAGUACaaGgUGCCC-----CGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 9047 0.73 0.368984
Target:  5'- gGCGCcccgCGUGcUCCGgGGGcGCCGGCCg -3'
miRNA:   3'- -UGCGa---GUACaAGGUgCCC-CGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 119105 0.74 0.361068
Target:  5'- gGCGCguaCGUGagCCGCGcGGCCGGCCUc -3'
miRNA:   3'- -UGCGa--GUACaaGGUGCcCCGGCUGGA- -5'
29368 3' -58.7 NC_006151.1 + 98258 0.74 0.353272
Target:  5'- gGCGCUCGUGcgCgCGCucgaGGaGGCCGACCa -3'
miRNA:   3'- -UGCGAGUACaaG-GUG----CC-CCGGCUGGa -5'
29368 3' -58.7 NC_006151.1 + 22185 0.77 0.227959
Target:  5'- gGCGCgUGUGguagacgUCCGCGGGGCCGACg- -3'
miRNA:   3'- -UGCGaGUACa------AGGUGCCCCGGCUGga -5'
29368 3' -58.7 NC_006151.1 + 140004 1.08 0.0019
Target:  5'- gACGCUCAUGUUCCACGGGGCCGACCUg -3'
miRNA:   3'- -UGCGAGUACAAGGUGCCCCGGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.