miRNA display CGI


Results 61 - 80 of 277 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 96310 0.67 0.604928
Target:  5'- uUGAGcGccgacUGCaGGCCGCGCGCguagagCGCCGGGu -3'
miRNA:   3'- -ACUC-C-----ACG-CCGGCGUGCG------GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 10015 0.67 0.604928
Target:  5'- cGGcGGcgGCGGUCGC-CGCgGCCagGAGGa -3'
miRNA:   3'- aCU-CCa-CGCCGGCGuGCGgUGG--CUCC- -5'
29368 5' -61.9 NC_006151.1 + 36112 0.67 0.604928
Target:  5'- cGAGGccgccguccucGCGGCCGCGgccggaGCCA-CGAGGc -3'
miRNA:   3'- aCUCCa----------CGCCGGCGUg-----CGGUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 135489 0.67 0.604928
Target:  5'- -cGGGccagGCGGCgCGCG-GCCucgGCCGAGGc -3'
miRNA:   3'- acUCCa---CGCCG-GCGUgCGG---UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 96729 0.67 0.604928
Target:  5'- cGAGGagGCGGCgGgCGCGaCgACgGAGGc -3'
miRNA:   3'- aCUCCa-CGCCGgC-GUGC-GgUGgCUCC- -5'
29368 5' -61.9 NC_006151.1 + 58763 0.67 0.60199
Target:  5'- -----cGCGGCCGCcgagcccguccacgGCGCCGCCGucacguGGa -3'
miRNA:   3'- acuccaCGCCGGCG--------------UGCGGUGGCu-----CC- -5'
29368 5' -61.9 NC_006151.1 + 76343 0.67 0.595141
Target:  5'- -cGGGUGCGGCCcgucGCGCGCgauCAUCGGc- -3'
miRNA:   3'- acUCCACGCCGG----CGUGCG---GUGGCUcc -5'
29368 5' -61.9 NC_006151.1 + 29427 0.67 0.595141
Target:  5'- --cGGUGUGGCCGCGgggGgCGgCGGGGa -3'
miRNA:   3'- acuCCACGCCGGCGUg--CgGUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 4213 0.67 0.595141
Target:  5'- cGAGG-GCGGCCgGgGCGCgGgCGGGc -3'
miRNA:   3'- aCUCCaCGCCGG-CgUGCGgUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 5503 0.67 0.585379
Target:  5'- gGAGGaGaCGGggcuCCGgGCGCCaagcgGCCGAGGa -3'
miRNA:   3'- aCUCCaC-GCC----GGCgUGCGG-----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 10415 0.67 0.585379
Target:  5'- cGGGGUGaC-GCCGCGgGUgGgCCGAGGc -3'
miRNA:   3'- aCUCCAC-GcCGGCGUgCGgU-GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 97648 0.67 0.585379
Target:  5'- --uGGUGCGcGCCGccucCugGUCGCCGcGGg -3'
miRNA:   3'- acuCCACGC-CGGC----GugCGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 98992 0.67 0.585379
Target:  5'- cGAGGUcaacGCcacGCCGCGCacgGCCGUCGAGGu -3'
miRNA:   3'- aCUCCA----CGc--CGGCGUG---CGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 96594 0.67 0.585379
Target:  5'- cGAGGcGCcgGGCgcggGCGCGCCGacgucgugcCCGAGGg -3'
miRNA:   3'- aCUCCaCG--CCGg---CGUGCGGU---------GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 114106 0.67 0.579536
Target:  5'- cUGGGccucgGCGGCUGCugccccacgugcgcCGCCGCCGAGc -3'
miRNA:   3'- -ACUCca---CGCCGGCGu-------------GCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 98429 0.67 0.575648
Target:  5'- cGAG--GCGGCCGUGC-UCGCCGAGa -3'
miRNA:   3'- aCUCcaCGCCGGCGUGcGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 61186 0.67 0.575648
Target:  5'- -----aGUGGCCGCcaGCGCCGCgGAGa -3'
miRNA:   3'- acuccaCGCCGGCG--UGCGGUGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 57979 0.67 0.575648
Target:  5'- gGuGG-GCGGCgaGCGCGCCGCgGAc- -3'
miRNA:   3'- aCuCCaCGCCGg-CGUGCGGUGgCUcc -5'
29368 5' -61.9 NC_006151.1 + 45434 0.67 0.575648
Target:  5'- gGGGGUucGCGGgcgUCGCACGC-ACCGcGGGg -3'
miRNA:   3'- aCUCCA--CGCC---GGCGUGCGgUGGC-UCC- -5'
29368 5' -61.9 NC_006151.1 + 39103 0.67 0.575648
Target:  5'- cGAGGagcucUGC-GCCGaGC-CCGCCGAGGg -3'
miRNA:   3'- aCUCC-----ACGcCGGCgUGcGGUGGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.