miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 128444 0.66 0.634375
Target:  5'- aGGGcGUcuCGGCC-CACGUggCGCCGAGGa -3'
miRNA:   3'- aCUC-CAc-GCCGGcGUGCG--GUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 63926 0.66 0.634375
Target:  5'- cGccGUGgGGCuCGCGuCGuCCGCCGAGa -3'
miRNA:   3'- aCucCACgCCG-GCGU-GC-GGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 12673 0.66 0.634375
Target:  5'- -----cGCGGCCGCA-GCCGCCGcGa -3'
miRNA:   3'- acuccaCGCCGGCGUgCGGUGGCuCc -5'
29368 5' -61.9 NC_006151.1 + 92164 0.66 0.634375
Target:  5'- --uGGccGCGGCCGUGCGC-GCCGAcGGn -3'
miRNA:   3'- acuCCa-CGCCGGCGUGCGgUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 93436 0.66 0.634375
Target:  5'- gGAGGgggGCGaGCgggGguCGCCGCCGcGGGg -3'
miRNA:   3'- aCUCCa--CGC-CGg--CguGCGGUGGC-UCC- -5'
29368 5' -61.9 NC_006151.1 + 73785 0.66 0.628481
Target:  5'- -uGGGcgGCGGCgCGCaccucgGCGCCcacgucgcgcauggcGCCGAGGu -3'
miRNA:   3'- acUCCa-CGCCG-GCG------UGCGG---------------UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 8363 0.66 0.624552
Target:  5'- gGAGGcGCgaGGCCcC-CGCCcCCGGGGg -3'
miRNA:   3'- aCUCCaCG--CCGGcGuGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 40565 0.66 0.624552
Target:  5'- aGcGGcgGCGGCgGC-CGCgGCgGAGGg -3'
miRNA:   3'- aCuCCa-CGCCGgCGuGCGgUGgCUCC- -5'
29368 5' -61.9 NC_006151.1 + 44373 0.66 0.624552
Target:  5'- aGAGGguUGCGacggucccGCCGCgGgGgCGCCGAGGa -3'
miRNA:   3'- aCUCC--ACGC--------CGGCG-UgCgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 75809 0.66 0.624552
Target:  5'- cGuGGUGCaGGagccgcuggCGCACGCCgGCCGuGGu -3'
miRNA:   3'- aCuCCACG-CCg--------GCGUGCGG-UGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 104688 0.66 0.624552
Target:  5'- nGGGGUGCacCUGCACGUgccgagCACCGAGc -3'
miRNA:   3'- aCUCCACGccGGCGUGCG------GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 59438 0.66 0.624552
Target:  5'- --cGGcGuCGGCCGC-CGCCGCCGcGa -3'
miRNA:   3'- acuCCaC-GCCGGCGuGCGGUGGCuCc -5'
29368 5' -61.9 NC_006151.1 + 103545 0.66 0.624552
Target:  5'- --uGGUGgGcGCCGgGCaGCCGCuCGGGGc -3'
miRNA:   3'- acuCCACgC-CGGCgUG-CGGUG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 132032 0.67 0.614734
Target:  5'- aGAGGUagccgGCGGCgCGCggcaGCGCgGCgGAGa -3'
miRNA:   3'- aCUCCA-----CGCCG-GCG----UGCGgUGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 136421 0.67 0.614734
Target:  5'- cGGGGccccGCGGCggCGCACGCCGCgcgcuacgucgaCGAGc -3'
miRNA:   3'- aCUCCa---CGCCG--GCGUGCGGUG------------GCUCc -5'
29368 5' -61.9 NC_006151.1 + 3305 0.67 0.614734
Target:  5'- cGaAGGUGaGcGCCGgGCGCCAgaguUCGGGGa -3'
miRNA:   3'- aC-UCCACgC-CGGCgUGCGGU----GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 13106 0.67 0.614734
Target:  5'- aGAGGUcGCGGCgggucaCGCGCGCUcCCGcGa -3'
miRNA:   3'- aCUCCA-CGCCG------GCGUGCGGuGGCuCc -5'
29368 5' -61.9 NC_006151.1 + 58010 0.67 0.614734
Target:  5'- --cGGcGCGGCCGCG-GCCACCu--- -3'
miRNA:   3'- acuCCaCGCCGGCGUgCGGUGGcucc -5'
29368 5' -61.9 NC_006151.1 + 137411 0.67 0.614734
Target:  5'- cGGGGgGCGcccucGCCGC-CGCCGCgGGGu -3'
miRNA:   3'- aCUCCaCGC-----CGGCGuGCGGUGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 135489 0.67 0.604928
Target:  5'- -cGGGccagGCGGCgCGCG-GCCucgGCCGAGGc -3'
miRNA:   3'- acUCCa---CGCCG-GCGUgCGG---UGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.