miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 75862 0.66 0.660869
Target:  5'- cGGGGcgccccUGCGuGUccgcgugggucaugCGCGCgacgGCCACCGAGGg -3'
miRNA:   3'- aCUCC------ACGC-CG--------------GCGUG----CGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 106365 0.66 0.654009
Target:  5'- --uGGacGCGGgCGCGCGCCcGCCGcGGc -3'
miRNA:   3'- acuCCa-CGCCgGCGUGCGG-UGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 100211 0.66 0.654009
Target:  5'- cGAuGGccaCGGCCGCggGCGCCgugGCCGAGc -3'
miRNA:   3'- aCU-CCac-GCCGGCG--UGCGG---UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 60868 0.66 0.654009
Target:  5'- cGAGGacccgcgGCaGCCGCGCagcaGCCGCgCGAGc -3'
miRNA:   3'- aCUCCa------CGcCGGCGUG----CGGUG-GCUCc -5'
29368 5' -61.9 NC_006151.1 + 23947 0.66 0.654009
Target:  5'- cGGGGUGCcGuaGCAgaGCUcCCGAGGg -3'
miRNA:   3'- aCUCCACGcCggCGUg-CGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 39880 0.66 0.654009
Target:  5'- cGAGGgccUGcCGGCCgaguuGCGCGCCuucugcGCCGcGGg -3'
miRNA:   3'- aCUCC---AC-GCCGG-----CGUGCGG------UGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 14155 0.66 0.654009
Target:  5'- cGAGGa---GCCGCGCcCCGCuCGAGGa -3'
miRNA:   3'- aCUCCacgcCGGCGUGcGGUG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 134216 0.66 0.654009
Target:  5'- cGGGG-GCGGUCGCACcaCCAaCGGGa -3'
miRNA:   3'- aCUCCaCGCCGGCGUGc-GGUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 117142 0.66 0.653028
Target:  5'- gGAGGUGCGcgaccaggcgcccGCUGUugcucgagacGCgguagaaggGCCGCCGGGGg -3'
miRNA:   3'- aCUCCACGC-------------CGGCG----------UG---------CGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 17702 0.66 0.653028
Target:  5'- cGAGGaagGCuGCUGUguGCGCCcgggugcGCCGGGGc -3'
miRNA:   3'- aCUCCa--CGcCGGCG--UGCGG-------UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 59498 0.66 0.651067
Target:  5'- aGAGcccgGCGGCCuccgcgacgcgcgcGCAgCGCCGCgUGAGGg -3'
miRNA:   3'- aCUCca--CGCCGG--------------CGU-GCGGUG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 82607 0.66 0.644196
Target:  5'- -aGGGUG-GGcCCGCGCGCgggCGCCGcGGu -3'
miRNA:   3'- acUCCACgCC-GGCGUGCG---GUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 29061 0.66 0.644196
Target:  5'- cGAGuugGCGgcGCCGCGgGCC-CCGAGa -3'
miRNA:   3'- aCUCca-CGC--CGGCGUgCGGuGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 77355 0.66 0.644196
Target:  5'- gGGGGUGCuGUUcUACGUCGCCGAcGGc -3'
miRNA:   3'- aCUCCACGcCGGcGUGCGGUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 90733 0.66 0.644196
Target:  5'- cGAcGGUgGCGGCgGCGC-CC-UCGGGGg -3'
miRNA:   3'- aCU-CCA-CGCCGgCGUGcGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 113961 0.66 0.644196
Target:  5'- -----cGCGGCCGCGCaGCCcucggaCGAGGu -3'
miRNA:   3'- acuccaCGCCGGCGUG-CGGug----GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 137678 0.66 0.644196
Target:  5'- cGccGUGCGGCUGcCGCGCCAagaUGGGc -3'
miRNA:   3'- aCucCACGCCGGC-GUGCGGUg--GCUCc -5'
29368 5' -61.9 NC_006151.1 + 2287 0.66 0.644196
Target:  5'- cGGGGcgcccGCGGCgGCgACGgCGCCcGGGGu -3'
miRNA:   3'- aCUCCa----CGCCGgCG-UGCgGUGG-CUCC- -5'
29368 5' -61.9 NC_006151.1 + 56668 0.66 0.644196
Target:  5'- --uGGUGgacgaCGGCgccgCGCGCGCuCACCGAGa -3'
miRNA:   3'- acuCCAC-----GCCG----GCGUGCG-GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 93436 0.66 0.634375
Target:  5'- gGAGGgggGCGaGCgggGguCGCCGCCGcGGGg -3'
miRNA:   3'- aCUCCa--CGC-CGg--CguGCGGUGGC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.