miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 10918 0.73 0.267088
Target:  5'- cGGGGUcgGGCC-CACGgCGCCGAGGg -3'
miRNA:   3'- aCUCCAcgCCGGcGUGCgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 12673 0.66 0.634375
Target:  5'- -----cGCGGCCGCA-GCCGCCGcGa -3'
miRNA:   3'- acuccaCGCCGGCGUgCGGUGGCuCc -5'
29368 5' -61.9 NC_006151.1 + 13106 0.67 0.614734
Target:  5'- aGAGGUcGCGGCgggucaCGCGCGCUcCCGcGa -3'
miRNA:   3'- aCUCCA-CGCCG------GCGUGCGGuGGCuCc -5'
29368 5' -61.9 NC_006151.1 + 14128 0.72 0.326418
Target:  5'- aGAGGcGCGGa-GCGCGCC-CCGAGc -3'
miRNA:   3'- aCUCCaCGCCggCGUGCGGuGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 14155 0.66 0.654009
Target:  5'- cGAGGa---GCCGCGCcCCGCuCGAGGa -3'
miRNA:   3'- aCUCCacgcCGGCGUGcGGUG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 15034 0.71 0.378962
Target:  5'- gGAGGUGCGcGUC-CACGgCGCgCGGGGc -3'
miRNA:   3'- aCUCCACGC-CGGcGUGCgGUG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 15868 0.7 0.394982
Target:  5'- gGAGG-GCGGgaaggaCGC-CGcCCGCCGGGGg -3'
miRNA:   3'- aCUCCaCGCCg-----GCGuGC-GGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 17702 0.66 0.653028
Target:  5'- cGAGGaagGCuGCUGUguGCGCCcgggugcGCCGGGGc -3'
miRNA:   3'- aCUCCa--CGcCGGCG--UGCGG-------UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 19030 0.74 0.227213
Target:  5'- cGAGGUGaaGCUGCACGCCggguccACCGGGc -3'
miRNA:   3'- aCUCCACgcCGGCGUGCGG------UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 19268 0.68 0.499581
Target:  5'- cGGGGcucGUGGCgCGCGgGgcCCACCGGGGc -3'
miRNA:   3'- aCUCCa--CGCCG-GCGUgC--GGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 20127 0.68 0.499581
Target:  5'- cGGGGcugGgGGgCGgGCGCCGCgGGGGc -3'
miRNA:   3'- aCUCCa--CgCCgGCgUGCGGUGgCUCC- -5'
29368 5' -61.9 NC_006151.1 + 20181 0.66 0.667718
Target:  5'- -cGGGUcGCGGCCgguagaugcgauuccGCGCGCagCGCCGGGc -3'
miRNA:   3'- acUCCA-CGCCGG---------------CGUGCG--GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 21367 0.66 0.673579
Target:  5'- cGGGcUGCGGCCacccgcuggGCACGaCgGCCGGcGGg -3'
miRNA:   3'- aCUCcACGCCGG---------CGUGC-GgUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 21487 0.69 0.472186
Target:  5'- cGGGcagGCGGCCGgggggcgcggGCGUCACCGGGGc -3'
miRNA:   3'- aCUCca-CGCCGGCg---------UGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 22082 0.66 0.673579
Target:  5'- -uGGGcGCGGUaCGUggGCCGCCGGuGGg -3'
miRNA:   3'- acUCCaCGCCG-GCGugCGGUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 23947 0.66 0.654009
Target:  5'- cGGGGUGCcGuaGCAgaGCUcCCGAGGg -3'
miRNA:   3'- aCUCCACGcCggCGUg-CGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 24448 0.68 0.546699
Target:  5'- gUGucGUaGCGGUCGCGCGCgagCACCucGGGGg -3'
miRNA:   3'- -ACucCA-CGCCGGCGUGCG---GUGG--CUCC- -5'
29368 5' -61.9 NC_006151.1 + 24733 0.68 0.499581
Target:  5'- cGAaaGUGCGGCaggaccagGCACGUCGCCGGGc -3'
miRNA:   3'- aCUc-CACGCCGg-------CGUGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 26213 0.68 0.546699
Target:  5'- uUGAGGUuCGaGCgGCGgGCCGCCguguuuauuGAGGg -3'
miRNA:   3'- -ACUCCAcGC-CGgCGUgCGGUGG---------CUCC- -5'
29368 5' -61.9 NC_006151.1 + 26350 0.69 0.490368
Target:  5'- -cGGG-GCGGCgGCGgGCCGCguCGGGGc -3'
miRNA:   3'- acUCCaCGCCGgCGUgCGGUG--GCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.