miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 66546 0.75 0.221947
Target:  5'- cGGGGgcgcgcGCGGCCGC--GCCGCCGuGGa -3'
miRNA:   3'- aCUCCa-----CGCCGGCGugCGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 19030 0.74 0.227213
Target:  5'- cGAGGUGaaGCUGCACGCCggguccACCGGGc -3'
miRNA:   3'- aCUCCACgcCGGCGUGCGG------UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 104897 0.74 0.227213
Target:  5'- cGAGGUgguggacgcgGCGGCgGCGCGCgACCGcgacGGGg -3'
miRNA:   3'- aCUCCA----------CGCCGgCGUGCGgUGGC----UCC- -5'
29368 5' -61.9 NC_006151.1 + 86594 0.74 0.227213
Target:  5'- cGAGcUGCuGgCGCGCGCCGCCGAGu -3'
miRNA:   3'- aCUCcACGcCgGCGUGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 59239 0.74 0.232585
Target:  5'- --cGGcUGCGGCCGaCGCGCaCGCCGAaGGc -3'
miRNA:   3'- acuCC-ACGCCGGC-GUGCG-GUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 121939 0.74 0.238063
Target:  5'- gGGGGcGCuGGCCGC-CGCCggcgacgacGCCGAGGc -3'
miRNA:   3'- aCUCCaCG-CCGGCGuGCGG---------UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 5620 0.74 0.243649
Target:  5'- gGAGGggGC-GCCGC-CGCCGCCGGGc -3'
miRNA:   3'- aCUCCa-CGcCGGCGuGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 48909 0.74 0.255148
Target:  5'- cGAGuaccGCGGCCGC-UGCCugACCGAGGa -3'
miRNA:   3'- aCUCca--CGCCGGCGuGCGG--UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 35971 0.73 0.261062
Target:  5'- -----gGCGGCCGC-CGCCgcgGCCGAGGa -3'
miRNA:   3'- acuccaCGCCGGCGuGCGG---UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 57537 0.73 0.261062
Target:  5'- --cGGcGCGGCCGCgggcACGUCGCCGAGc -3'
miRNA:   3'- acuCCaCGCCGGCG----UGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 105934 0.73 0.261062
Target:  5'- cGAGcUGCGcCCGC-CGCuCACCGAGGg -3'
miRNA:   3'- aCUCcACGCcGGCGuGCG-GUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 95215 0.73 0.261062
Target:  5'- cGAgcGGcUGC-GCCGCACGCCcucgACCGAGGc -3'
miRNA:   3'- aCU--CC-ACGcCGGCGUGCGG----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 10918 0.73 0.267088
Target:  5'- cGGGGUcgGGCC-CACGgCGCCGAGGg -3'
miRNA:   3'- aCUCCAcgCCGGcGUGCgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 88157 0.73 0.267088
Target:  5'- cGGGGUGCu-CCGCGCaGgCGCCGAGGu -3'
miRNA:   3'- aCUCCACGccGGCGUG-CgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 33007 0.73 0.267088
Target:  5'- gUGGGuUGuCGGCUGUugGCCguugGCCGAGGa -3'
miRNA:   3'- -ACUCcAC-GCCGGCGugCGG----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 91915 0.73 0.272607
Target:  5'- --uGGUGCgcucggaGGCCaucucCACGCCGCCGGGGg -3'
miRNA:   3'- acuCCACG-------CCGGc----GUGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 105706 0.73 0.273225
Target:  5'- --cGGcGCGGCCGCGCGCC-UCGAcGGc -3'
miRNA:   3'- acuCCaCGCCGGCGUGCGGuGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 130625 0.73 0.273225
Target:  5'- --uGGUcGCGGCUcacgaGCGCCGCCGAGGc -3'
miRNA:   3'- acuCCA-CGCCGGcg---UGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 58148 0.73 0.279476
Target:  5'- -----cGCGGCCGCGUGCCACCGGcGGu -3'
miRNA:   3'- acuccaCGCCGGCGUGCGGUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 139652 0.73 0.279476
Target:  5'- gGGGGUcGCGGCgGgCGCGCCGCCcgacAGGc -3'
miRNA:   3'- aCUCCA-CGCCGgC-GUGCGGUGGc---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.