miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 140042 1.09 0.000896
Target:  5'- uUGAGGUGCGGCCGCACGCCACCGAGGc -3'
miRNA:   3'- -ACUCCACGCCGGCGUGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 84769 0.84 0.048032
Target:  5'- cGAGGagGCGGacgcggCGCGCGCCGCCGAGGa -3'
miRNA:   3'- aCUCCa-CGCCg-----GCGUGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 115031 0.8 0.103609
Target:  5'- gUGAGGUGCGGCaggcgcguguugcUGUACGCguCCGGGGg -3'
miRNA:   3'- -ACUCCACGCCG-------------GCGUGCGguGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 75608 0.79 0.109246
Target:  5'- cGAGGU-CGGCgCGCACGCgCGCCGAGc -3'
miRNA:   3'- aCUCCAcGCCG-GCGUGCG-GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 113079 0.79 0.114881
Target:  5'- cGAGcGcGCGGCCGUcgccgcCGCCACCGGGGg -3'
miRNA:   3'- aCUC-CaCGCCGGCGu-----GCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 82657 0.78 0.123845
Target:  5'- cGAGG-GCGGCCcacccugcgGCGCGCCGCgggCGAGGg -3'
miRNA:   3'- aCUCCaCGCCGG---------CGUGCGGUG---GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 133661 0.78 0.136806
Target:  5'- aGAGGcgcugccggcGCGGCgGCGCGCCcCCGAGGc -3'
miRNA:   3'- aCUCCa---------CGCCGgCGUGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 67940 0.78 0.143745
Target:  5'- -----cGCGGCCGCGCGCCcaccacgcGCCGGGGg -3'
miRNA:   3'- acuccaCGCCGGCGUGCGG--------UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 82006 0.78 0.143745
Target:  5'- -cAGG-GCGGCCGCguGCGCCGCCGAc- -3'
miRNA:   3'- acUCCaCGCCGGCG--UGCGGUGGCUcc -5'
29368 5' -61.9 NC_006151.1 + 97909 0.77 0.158594
Target:  5'- gGAGGcGCGgauGCCGU-CGCCGCCGAGGc -3'
miRNA:   3'- aCUCCaCGC---CGGCGuGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 130282 0.77 0.158594
Target:  5'- cGAGGccGCGGgCGCGCGCCgGCCGAcGGc -3'
miRNA:   3'- aCUCCa-CGCCgGCGUGCGG-UGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 81569 0.77 0.165718
Target:  5'- cGuGGUGCGGagcagggucucgCGCGCGUCGCCGGGGc -3'
miRNA:   3'- aCuCCACGCCg-----------GCGUGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 105275 0.76 0.183909
Target:  5'- gGAGGacuuugggcgcgcgcGCGGCCGCgccgGCGCCuCCGAGGa -3'
miRNA:   3'- aCUCCa--------------CGCCGGCG----UGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 65716 0.76 0.192496
Target:  5'- aGGGGgccucgcGCGGCUGCGCGCgGCCcAGGa -3'
miRNA:   3'- aCUCCa------CGCCGGCGUGCGgUGGcUCC- -5'
29368 5' -61.9 NC_006151.1 + 84056 0.76 0.192496
Target:  5'- gGGGGUGgGGCCGCAccugugcuuCGUCAUCGAGc -3'
miRNA:   3'- aCUCCACgCCGGCGU---------GCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 101750 0.75 0.201912
Target:  5'- --cGGacccgGCGGCCGcCGCGCCGCCGAcgcGGg -3'
miRNA:   3'- acuCCa----CGCCGGC-GUGCGGUGGCU---CC- -5'
29368 5' -61.9 NC_006151.1 + 99586 0.75 0.206768
Target:  5'- cGAGGUggcgGCGGCCGaGCGCCgcGCCGGGc -3'
miRNA:   3'- aCUCCA----CGCCGGCgUGCGG--UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 69278 0.75 0.211725
Target:  5'- --uGGUaGUGGCgGCGCGCCACCaGGGa -3'
miRNA:   3'- acuCCA-CGCCGgCGUGCGGUGGcUCC- -5'
29368 5' -61.9 NC_006151.1 + 117259 0.75 0.216784
Target:  5'- cGAGGcGCgGGCCGCGCGCgGCCGc-- -3'
miRNA:   3'- aCUCCaCG-CCGGCGUGCGgUGGCucc -5'
29368 5' -61.9 NC_006151.1 + 66546 0.75 0.221947
Target:  5'- cGGGGgcgcgcGCGGCCGC--GCCGCCGuGGa -3'
miRNA:   3'- aCUCCa-----CGCCGGCGugCGGUGGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.