miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 75862 0.66 0.660869
Target:  5'- cGGGGcgccccUGCGuGUccgcgugggucaugCGCGCgacgGCCACCGAGGg -3'
miRNA:   3'- aCUCC------ACGC-CG--------------GCGUG----CGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 20181 0.66 0.667718
Target:  5'- -cGGGUcGCGGCCgguagaugcgauuccGCGCGCagCGCCGGGc -3'
miRNA:   3'- acUCCA-CGCCGG---------------CGUGCG--GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 81430 0.66 0.663806
Target:  5'- cGAGGUcGCGGCgcagcgagacggCGCACGgCGa-GAGGa -3'
miRNA:   3'- aCUCCA-CGCCG------------GCGUGCgGUggCUCC- -5'
29368 5' -61.9 NC_006151.1 + 10483 0.66 0.663806
Target:  5'- gGAGGagagccgccCGGCgCGCGCccGCCGCCGcAGGc -3'
miRNA:   3'- aCUCCac-------GCCG-GCGUG--CGGUGGC-UCC- -5'
29368 5' -61.9 NC_006151.1 + 102644 0.66 0.663806
Target:  5'- cGAGGcgGCgcucgaGGCCGCccACGCCaacuuugacGCCGuGGa -3'
miRNA:   3'- aCUCCa-CG------CCGGCG--UGCGG---------UGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 97354 0.66 0.663806
Target:  5'- cGGGGaaggccgcgGCGGCgGCGgGCgCGgCGGGGg -3'
miRNA:   3'- aCUCCa--------CGCCGgCGUgCG-GUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 125993 0.66 0.663806
Target:  5'- cGuGGUGCuGCUGCGCGgCAUCGccaacuucuuccAGGg -3'
miRNA:   3'- aCuCCACGcCGGCGUGCgGUGGC------------UCC- -5'
29368 5' -61.9 NC_006151.1 + 107034 0.66 0.663806
Target:  5'- cGcGGcGCGGCCcCugGCCGgCGAGc -3'
miRNA:   3'- aCuCCaCGCCGGcGugCGGUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 42271 0.66 0.662827
Target:  5'- gGGGGUG-GGaUCGCGagccucuCGCC-CCGGGGg -3'
miRNA:   3'- aCUCCACgCC-GGCGU-------GCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 87415 0.66 0.672603
Target:  5'- gGuGGUGCaggcccagccgguGGCCGUGCccgccGCCGCCGcGGc -3'
miRNA:   3'- aCuCCACG-------------CCGGCGUG-----CGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 35080 0.66 0.673579
Target:  5'- gGGGGUG-GGUCGCgugccgagcauGCGCCucgcgcccGCgCGAGGg -3'
miRNA:   3'- aCUCCACgCCGGCG-----------UGCGG--------UG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 5077 0.66 0.673579
Target:  5'- cGAGGgccgcGgGGCCGCggcggGCGCCgGCgGAGa -3'
miRNA:   3'- aCUCCa----CgCCGGCG-----UGCGG-UGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 85488 0.66 0.673579
Target:  5'- cGAGGacGCGccgcuGCUGCGCGCCACgGuGa -3'
miRNA:   3'- aCUCCa-CGC-----CGGCGUGCGGUGgCuCc -5'
29368 5' -61.9 NC_006151.1 + 5224 0.66 0.673579
Target:  5'- cGAGGaggaGGCCGaGCGCCGCgcggcggcggCGGGGg -3'
miRNA:   3'- aCUCCacg-CCGGCgUGCGGUG----------GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 139510 0.66 0.673579
Target:  5'- gGAGGacaGCGGCaacaGCAgCGgCAgCGAGGc -3'
miRNA:   3'- aCUCCa--CGCCGg---CGU-GCgGUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 137532 0.66 0.673579
Target:  5'- cGAGGacuggGCGGacugggaCGCggGCGuccCCGCCGAGGu -3'
miRNA:   3'- aCUCCa----CGCCg------GCG--UGC---GGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 136666 0.66 0.673579
Target:  5'- cGGGGagcgcGCGGCCGC-CGCCuucuuCCGccacgugcGGGc -3'
miRNA:   3'- aCUCCa----CGCCGGCGuGCGGu----GGC--------UCC- -5'
29368 5' -61.9 NC_006151.1 + 129871 0.66 0.673579
Target:  5'- cGuGGcgucGCGcGCCGC-CGCCACCucGGu -3'
miRNA:   3'- aCuCCa---CGC-CGGCGuGCGGUGGcuCC- -5'
29368 5' -61.9 NC_006151.1 + 22082 0.66 0.673579
Target:  5'- -uGGGcGCGGUaCGUggGCCGCCGGuGGg -3'
miRNA:   3'- acUCCaCGCCG-GCGugCGGUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 21367 0.66 0.673579
Target:  5'- cGGGcUGCGGCCacccgcuggGCACGaCgGCCGGcGGg -3'
miRNA:   3'- aCUCcACGCCGG---------CGUGC-GgUGGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.