miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 1698 0.68 0.53715
Target:  5'- -----cGCGGCCGC-CGCCGCCGc-- -3'
miRNA:   3'- acuccaCGCCGGCGuGCGGUGGCucc -5'
29368 5' -61.9 NC_006151.1 + 1846 0.68 0.508869
Target:  5'- cGAGGgGaccgaGGCCGC-CGCCGCggacgcaGAGGa -3'
miRNA:   3'- aCUCCaCg----CCGGCGuGCGGUGg------CUCC- -5'
29368 5' -61.9 NC_006151.1 + 2117 0.71 0.355764
Target:  5'- cGGGGc-CGGCCGU-CGCCGCCGcGGa -3'
miRNA:   3'- aCUCCacGCCGGCGuGCGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 2287 0.66 0.644196
Target:  5'- cGGGGcgcccGCGGCgGCgACGgCGCCcGGGGu -3'
miRNA:   3'- aCUCCa----CGCCGgCG-UGCgGUGG-CUCC- -5'
29368 5' -61.9 NC_006151.1 + 2418 0.68 0.507937
Target:  5'- cGAGGccccgGCGGCCGCaggagacgaagacGgGCCGCagCGGGGc -3'
miRNA:   3'- aCUCCa----CGCCGGCG-------------UgCGGUG--GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 3305 0.67 0.614734
Target:  5'- cGaAGGUGaGcGCCGgGCGCCAgaguUCGGGGa -3'
miRNA:   3'- aC-UCCACgC-CGGCgUGCGGU----GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 3867 0.7 0.403154
Target:  5'- gGAGGggGCGcCCGC-CGCCGCCGGc- -3'
miRNA:   3'- aCUCCa-CGCcGGCGuGCGGUGGCUcc -5'
29368 5' -61.9 NC_006151.1 + 4213 0.67 0.595141
Target:  5'- cGAGG-GCGGCCgGgGCGCgGgCGGGc -3'
miRNA:   3'- aCUCCaCGCCGG-CgUGCGgUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 5077 0.66 0.673579
Target:  5'- cGAGGgccgcGgGGCCGCggcggGCGCCgGCgGAGa -3'
miRNA:   3'- aCUCCa----CgCCGGCG-----UGCGG-UGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 5224 0.66 0.673579
Target:  5'- cGAGGaggaGGCCGaGCGCCGCgcggcggcggCGGGGg -3'
miRNA:   3'- aCUCCacg-CCGGCgUGCGGUG----------GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 5503 0.67 0.585379
Target:  5'- gGAGGaGaCGGggcuCCGgGCGCCaagcgGCCGAGGa -3'
miRNA:   3'- aCUCCaC-GCC----GGCgUGCGG-----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 5620 0.74 0.243649
Target:  5'- gGAGGggGC-GCCGC-CGCCGCCGGGc -3'
miRNA:   3'- aCUCCa-CGcCGGCGuGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 5737 0.68 0.51823
Target:  5'- cGGGGUccgaGGCCGCGcCGCCGgcCCGGGc -3'
miRNA:   3'- aCUCCAcg--CCGGCGU-GCGGU--GGCUCc -5'
29368 5' -61.9 NC_006151.1 + 5848 0.71 0.386917
Target:  5'- gGAGGcUGCGGagggggacgaGCGCccgggGCCGCCGGGGg -3'
miRNA:   3'- aCUCC-ACGCCgg--------CGUG-----CGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 5917 0.68 0.531447
Target:  5'- cGGGGUcgGCGGCCGgG-GCCcggagccggcccgggACCGGGGc -3'
miRNA:   3'- aCUCCA--CGCCGGCgUgCGG---------------UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 8245 0.72 0.312433
Target:  5'- gGAGG-GCcgGGCCgGCGCGCCGggacgccccuCCGGGGg -3'
miRNA:   3'- aCUCCaCG--CCGG-CGUGCGGU----------GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 8363 0.66 0.624552
Target:  5'- gGAGGcGCgaGGCCcC-CGCCcCCGGGGg -3'
miRNA:   3'- aCUCCaCG--CCGGcGuGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 10015 0.67 0.604928
Target:  5'- cGGcGGcgGCGGUCGC-CGCgGCCagGAGGa -3'
miRNA:   3'- aCU-CCa-CGCCGGCGuGCGgUGG--CUCC- -5'
29368 5' -61.9 NC_006151.1 + 10415 0.67 0.585379
Target:  5'- cGGGGUGaC-GCCGCGgGUgGgCCGAGGc -3'
miRNA:   3'- aCUCCAC-GcCGGCGUgCGgU-GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 10483 0.66 0.663806
Target:  5'- gGAGGagagccgccCGGCgCGCGCccGCCGCCGcAGGc -3'
miRNA:   3'- aCUCCac-------GCCG-GCGUG--CGGUGGC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.