miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 141747 0.69 0.481235
Target:  5'- aGGGGcGCgGGgCGCGCGCC-CCGGuGGc -3'
miRNA:   3'- aCUCCaCG-CCgGCGUGCGGuGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 140042 1.09 0.000896
Target:  5'- uUGAGGUGCGGCCGCACGCCACCGAGGc -3'
miRNA:   3'- -ACUCCACGCCGGCGUGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 139652 0.73 0.279476
Target:  5'- gGGGGUcGCGGCgGgCGCGCCGCCcgacAGGc -3'
miRNA:   3'- aCUCCA-CGCCGgC-GUGCGGUGGc---UCC- -5'
29368 5' -61.9 NC_006151.1 + 139603 0.68 0.53715
Target:  5'- cGAGcG-GCGGcCCGUccggGCGCgGCUGGGGg -3'
miRNA:   3'- aCUC-CaCGCC-GGCG----UGCGgUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 139510 0.66 0.673579
Target:  5'- gGAGGacaGCGGCaacaGCAgCGgCAgCGAGGc -3'
miRNA:   3'- aCUCCa--CGCCGg---CGU-GCgGUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 138604 0.72 0.333583
Target:  5'- cGcGGcGCuGCCGCucggcgaggACGCCGCCGGGGg -3'
miRNA:   3'- aCuCCaCGcCGGCG---------UGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 138529 0.7 0.4283
Target:  5'- cGGGGUGaugGGCgCGUACGCCgGCCuGGGc -3'
miRNA:   3'- aCUCCACg--CCG-GCGUGCGG-UGGcUCC- -5'
29368 5' -61.9 NC_006151.1 + 137678 0.66 0.644196
Target:  5'- cGccGUGCGGCUGcCGCGCCAagaUGGGc -3'
miRNA:   3'- aCucCACGCCGGC-GUGCGGUg--GCUCc -5'
29368 5' -61.9 NC_006151.1 + 137532 0.66 0.673579
Target:  5'- cGAGGacuggGCGGacugggaCGCggGCGuccCCGCCGAGGu -3'
miRNA:   3'- aCUCCa----CGCCg------GCG--UGC---GGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 137411 0.67 0.614734
Target:  5'- cGGGGgGCGcccucGCCGC-CGCCGCgGGGu -3'
miRNA:   3'- aCUCCaCGC-----CGGCGuGCGGUGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 136815 0.69 0.481235
Target:  5'- -----cGCGGCCGaCGCGCCGCgCGGGc -3'
miRNA:   3'- acuccaCGCCGGC-GUGCGGUG-GCUCc -5'
29368 5' -61.9 NC_006151.1 + 136666 0.66 0.673579
Target:  5'- cGGGGagcgcGCGGCCGC-CGCCuucuuCCGccacgugcGGGc -3'
miRNA:   3'- aCUCCa----CGCCGGCGuGCGGu----GGC--------UCC- -5'
29368 5' -61.9 NC_006151.1 + 136421 0.67 0.614734
Target:  5'- cGGGGccccGCGGCggCGCACGCCGCgcgcuacgucgaCGAGc -3'
miRNA:   3'- aCUCCa---CGCCG--GCGUGCGGUG------------GCUCc -5'
29368 5' -61.9 NC_006151.1 + 135489 0.67 0.604928
Target:  5'- -cGGGccagGCGGCgCGCG-GCCucgGCCGAGGc -3'
miRNA:   3'- acUCCa---CGCCG-GCGUgCGG---UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 135178 0.7 0.4283
Target:  5'- -cGGGcGcCGGCUGC-CGCCGCCGGGc -3'
miRNA:   3'- acUCCaC-GCCGGCGuGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 134797 0.69 0.490368
Target:  5'- gUGAGGccgcgGCGGCC-CGCGCCGgacCCGGacGGu -3'
miRNA:   3'- -ACUCCa----CGCCGGcGUGCGGU---GGCU--CC- -5'
29368 5' -61.9 NC_006151.1 + 134216 0.66 0.654009
Target:  5'- cGGGG-GCGGUCGCACcaCCAaCGGGa -3'
miRNA:   3'- aCUCCaCGCCGGCGUGc-GGUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 134106 0.71 0.378962
Target:  5'- gGAGG-GCGGCUGCuggugUGCCGgaguCCGGGGc -3'
miRNA:   3'- aCUCCaCGCCGGCGu----GCGGU----GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 133661 0.78 0.136806
Target:  5'- aGAGGcgcugccggcGCGGCgGCGCGCCcCCGAGGc -3'
miRNA:   3'- aCUCCa---------CGCCGgCGUGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 133613 0.68 0.53715
Target:  5'- cGAGGggcgucugGgGGUCGCG-GCgGCCGGGGc -3'
miRNA:   3'- aCUCCa-------CgCCGGCGUgCGgUGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.