miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 133469 0.72 0.305613
Target:  5'- cGAGGcccgcgagGCGGCCGCggGCGUCACCuuGGc -3'
miRNA:   3'- aCUCCa-------CGCCGGCG--UGCGGUGGcuCC- -5'
29368 5' -61.9 NC_006151.1 + 133376 0.68 0.508869
Target:  5'- gGuGGUgGCGGCCgGgGCgGCgGCCGGGGc -3'
miRNA:   3'- aCuCCA-CGCCGG-CgUG-CGgUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 133312 0.68 0.546699
Target:  5'- cGGGG-GCGGCCcgugucgagGCGCGCCgggcgGCCGGu- -3'
miRNA:   3'- aCUCCaCGCCGG---------CGUGCGG-----UGGCUcc -5'
29368 5' -61.9 NC_006151.1 + 132032 0.67 0.614734
Target:  5'- aGAGGUagccgGCGGCgCGCggcaGCGCgGCgGAGa -3'
miRNA:   3'- aCUCCA-----CGCCG-GCG----UGCGgUGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 131931 0.69 0.45435
Target:  5'- cGcGGUGCuGCCguaGCugGCCACgggCGAGGg -3'
miRNA:   3'- aCuCCACGcCGG---CGugCGGUG---GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 131845 0.69 0.45435
Target:  5'- aUGAGcGggGCGGCCGagACGCgCGCCGGcGGc -3'
miRNA:   3'- -ACUC-Ca-CGCCGGCg-UGCG-GUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 131766 0.71 0.378173
Target:  5'- cGcGGUcgcgaccGCGGCCGCggGCGCCGCCGucGu -3'
miRNA:   3'- aCuCCA-------CGCCGGCG--UGCGGUGGCucC- -5'
29368 5' -61.9 NC_006151.1 + 131051 0.69 0.490368
Target:  5'- cGGGGccgGaGGCCGUcuccAUGCCGCgGAGGg -3'
miRNA:   3'- aCUCCa--CgCCGGCG----UGCGGUGgCUCC- -5'
29368 5' -61.9 NC_006151.1 + 130896 0.71 0.386917
Target:  5'- gGAGGcgGCGGCCGU-CGCCgucgucggugGCCGGGc -3'
miRNA:   3'- aCUCCa-CGCCGGCGuGCGG----------UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 130723 0.7 0.394982
Target:  5'- cGGGGgcccgcGCGGCCGCggcgcaGCGCCACCcacGAcGGc -3'
miRNA:   3'- aCUCCa-----CGCCGGCG------UGCGGUGG---CU-CC- -5'
29368 5' -61.9 NC_006151.1 + 130625 0.73 0.273225
Target:  5'- --uGGUcGCGGCUcacgaGCGCCGCCGAGGc -3'
miRNA:   3'- acuCCA-CGCCGGcg---UGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 130552 0.7 0.406452
Target:  5'- cGAGG-GCGGCgCGC-UGCCGCCccacgagugcaucugGAGGu -3'
miRNA:   3'- aCUCCaCGCCG-GCGuGCGGUGG---------------CUCC- -5'
29368 5' -61.9 NC_006151.1 + 130359 0.69 0.463223
Target:  5'- cGuGGuUGaCGGCCGCGCGC-GCCGcGGc -3'
miRNA:   3'- aCuCC-AC-GCCGGCGUGCGgUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 130314 0.68 0.51823
Target:  5'- gGAGcGcGCGcGCCGCGCGCU--CGGGGa -3'
miRNA:   3'- aCUC-CaCGC-CGGCGUGCGGugGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 130282 0.77 0.158594
Target:  5'- cGAGGccGCGGgCGCGCGCCgGCCGAcGGc -3'
miRNA:   3'- aCUCCa-CGCCgGCGUGCGG-UGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 129871 0.66 0.673579
Target:  5'- cGuGGcgucGCGcGCCGC-CGCCACCucGGu -3'
miRNA:   3'- aCuCCa---CGC-CGGCGuGCGGUGGcuCC- -5'
29368 5' -61.9 NC_006151.1 + 129494 0.7 0.398238
Target:  5'- gGAGGgcaGCGcgggcgcgaugacgaGCCGCuuGCCGCCGAcGGg -3'
miRNA:   3'- aCUCCa--CGC---------------CGGCGugCGGUGGCU-CC- -5'
29368 5' -61.9 NC_006151.1 + 129345 0.71 0.386917
Target:  5'- -cGGG-GCGGCCgGCGCGCCGauaaaugcgcUCGGGGu -3'
miRNA:   3'- acUCCaCGCCGG-CGUGCGGU----------GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 129052 0.71 0.347512
Target:  5'- cGcGGUGCGGCUccgccgaGCACGCCGugaucacggacUCGGGGg -3'
miRNA:   3'- aCuCCACGCCGG-------CGUGCGGU-----------GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 128599 0.68 0.53715
Target:  5'- -----cGCGGcCCGCGCGCCACcCGcGGc -3'
miRNA:   3'- acuccaCGCC-GGCGUGCGGUG-GCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.