miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 99679 0.73 0.292316
Target:  5'- cUGGGGccUGCGcGCCG-ACGgCGCCGGGGa -3'
miRNA:   3'- -ACUCC--ACGC-CGGCgUGCgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 40023 0.73 0.292316
Target:  5'- cGAGaccaGCGuCCGCGcCGCCGCCGGGGg -3'
miRNA:   3'- aCUCca--CGCcGGCGU-GCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 133469 0.72 0.305613
Target:  5'- cGAGGcccgcgagGCGGCCGCggGCGUCACCuuGGc -3'
miRNA:   3'- aCUCCa-------CGCCGGCG--UGCGGUGGcuCC- -5'
29368 5' -61.9 NC_006151.1 + 48592 0.72 0.311746
Target:  5'- cGGGGUGCGccucgucgugccuGCCGC-CGCCGCCGc-- -3'
miRNA:   3'- aCUCCACGC-------------CGGCGuGCGGUGGCucc -5'
29368 5' -61.9 NC_006151.1 + 64460 0.72 0.312433
Target:  5'- -cAGGaugGCGG-CGCGCGCCGCCGcGGc -3'
miRNA:   3'- acUCCa--CGCCgGCGUGCGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 51200 0.72 0.312433
Target:  5'- cGAGG-GUGGCCaGCAgGCCGCCcGcGGg -3'
miRNA:   3'- aCUCCaCGCCGG-CGUgCGGUGG-CuCC- -5'
29368 5' -61.9 NC_006151.1 + 84654 0.72 0.312433
Target:  5'- --uGGccGCGGgCGCGCGCCucgagGCCGAGGu -3'
miRNA:   3'- acuCCa-CGCCgGCGUGCGG-----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 53737 0.72 0.312433
Target:  5'- aGAuGGUguucacguaGCGGCUcgaGUACGCCGCCGAGa -3'
miRNA:   3'- aCU-CCA---------CGCCGG---CGUGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 8245 0.72 0.312433
Target:  5'- gGAGG-GCcgGGCCgGCGCGCCGggacgccccuCCGGGGg -3'
miRNA:   3'- aCUCCaCG--CCGG-CGUGCGGU----------GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 42838 0.72 0.317276
Target:  5'- cGGGGUGgGaGCCGCcguCGCCGCugcacgacgaugguCGAGGg -3'
miRNA:   3'- aCUCCACgC-CGGCGu--GCGGUG--------------GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 103338 0.72 0.319368
Target:  5'- --uGGUGCaGGCggcgcagcaGCGCGCCGCCGAGc -3'
miRNA:   3'- acuCCACG-CCGg--------CGUGCGGUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 68785 0.72 0.319368
Target:  5'- cGAGGUGC-GCCGC-CGCgGCCGucaucAGGc -3'
miRNA:   3'- aCUCCACGcCGGCGuGCGgUGGC-----UCC- -5'
29368 5' -61.9 NC_006151.1 + 117583 0.72 0.319368
Target:  5'- gGAGGaUG-GGCCGCgugGCGCCGCCGcAGu -3'
miRNA:   3'- aCUCC-ACgCCGGCG---UGCGGUGGC-UCc -5'
29368 5' -61.9 NC_006151.1 + 50663 0.72 0.326418
Target:  5'- cGAGucGUgcGCGGCCGCacccccGCGCCGCCGcGGc -3'
miRNA:   3'- aCUC--CA--CGCCGGCG------UGCGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 54615 0.72 0.326418
Target:  5'- --cGGUGC-GCCggGCGCGCC-CCGGGGg -3'
miRNA:   3'- acuCCACGcCGG--CGUGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 103908 0.72 0.326418
Target:  5'- gGAGGU--GGCgCGCGCgGCCGCCGuGGa -3'
miRNA:   3'- aCUCCAcgCCG-GCGUG-CGGUGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 14128 0.72 0.326418
Target:  5'- aGAGGcGCGGa-GCGCGCC-CCGAGc -3'
miRNA:   3'- aCUCCaCGCCggCGUGCGGuGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 64504 0.72 0.333583
Target:  5'- -cGGGcgGCGGgCGCGCGCCGCCaaAGGc -3'
miRNA:   3'- acUCCa-CGCCgGCGUGCGGUGGc-UCC- -5'
29368 5' -61.9 NC_006151.1 + 138604 0.72 0.333583
Target:  5'- cGcGGcGCuGCCGCucggcgaggACGCCGCCGGGGg -3'
miRNA:   3'- aCuCCaCGcCGGCG---------UGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 100059 0.72 0.333583
Target:  5'- cGGGGU-CGuGCgCGCG-GCCGCCGAGGu -3'
miRNA:   3'- aCUCCAcGC-CG-GCGUgCGGUGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.