miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 20181 0.66 0.667718
Target:  5'- -cGGGUcGCGGCCgguagaugcgauuccGCGCGCagCGCCGGGc -3'
miRNA:   3'- acUCCA-CGCCGG---------------CGUGCG--GUGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 81430 0.66 0.663806
Target:  5'- cGAGGUcGCGGCgcagcgagacggCGCACGgCGa-GAGGa -3'
miRNA:   3'- aCUCCA-CGCCG------------GCGUGCgGUggCUCC- -5'
29368 5' -61.9 NC_006151.1 + 60868 0.66 0.654009
Target:  5'- cGAGGacccgcgGCaGCCGCGCagcaGCCGCgCGAGc -3'
miRNA:   3'- aCUCCa------CGcCGGCGUG----CGGUG-GCUCc -5'
29368 5' -61.9 NC_006151.1 + 100211 0.66 0.654009
Target:  5'- cGAuGGccaCGGCCGCggGCGCCgugGCCGAGc -3'
miRNA:   3'- aCU-CCac-GCCGGCG--UGCGG---UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 106365 0.66 0.654009
Target:  5'- --uGGacGCGGgCGCGCGCCcGCCGcGGc -3'
miRNA:   3'- acuCCa-CGCCgGCGUGCGG-UGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 134216 0.66 0.654009
Target:  5'- cGGGG-GCGGUCGCACcaCCAaCGGGa -3'
miRNA:   3'- aCUCCaCGCCGGCGUGc-GGUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 75862 0.66 0.660869
Target:  5'- cGGGGcgccccUGCGuGUccgcgugggucaugCGCGCgacgGCCACCGAGGg -3'
miRNA:   3'- aCUCC------ACGC-CG--------------GCGUG----CGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 42271 0.66 0.662827
Target:  5'- gGGGGUG-GGaUCGCGagccucuCGCC-CCGGGGg -3'
miRNA:   3'- aCUCCACgCC-GGCGU-------GCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 107034 0.66 0.663806
Target:  5'- cGcGGcGCGGCCcCugGCCGgCGAGc -3'
miRNA:   3'- aCuCCaCGCCGGcGugCGGUgGCUCc -5'
29368 5' -61.9 NC_006151.1 + 125993 0.66 0.663806
Target:  5'- cGuGGUGCuGCUGCGCGgCAUCGccaacuucuuccAGGg -3'
miRNA:   3'- aCuCCACGcCGGCGUGCgGUGGC------------UCC- -5'
29368 5' -61.9 NC_006151.1 + 97354 0.66 0.663806
Target:  5'- cGGGGaaggccgcgGCGGCgGCGgGCgCGgCGGGGg -3'
miRNA:   3'- aCUCCa--------CGCCGgCGUgCG-GUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 102644 0.66 0.663806
Target:  5'- cGAGGcgGCgcucgaGGCCGCccACGCCaacuuugacGCCGuGGa -3'
miRNA:   3'- aCUCCa-CG------CCGGCG--UGCGG---------UGGCuCC- -5'
29368 5' -61.9 NC_006151.1 + 10483 0.66 0.663806
Target:  5'- gGAGGagagccgccCGGCgCGCGCccGCCGCCGcAGGc -3'
miRNA:   3'- aCUCCac-------GCCG-GCGUG--CGGUGGC-UCC- -5'
29368 5' -61.9 NC_006151.1 + 96729 0.67 0.604928
Target:  5'- cGAGGagGCGGCgGgCGCGaCgACgGAGGc -3'
miRNA:   3'- aCUCCa-CGCCGgC-GUGC-GgUGgCUCC- -5'
29368 5' -61.9 NC_006151.1 + 132032 0.67 0.614734
Target:  5'- aGAGGUagccgGCGGCgCGCggcaGCGCgGCgGAGa -3'
miRNA:   3'- aCUCCA-----CGCCG-GCG----UGCGgUGgCUCc -5'
29368 5' -61.9 NC_006151.1 + 136421 0.67 0.614734
Target:  5'- cGGGGccccGCGGCggCGCACGCCGCgcgcuacgucgaCGAGc -3'
miRNA:   3'- aCUCCa---CGCCG--GCGUGCGGUG------------GCUCc -5'
29368 5' -61.9 NC_006151.1 + 3305 0.67 0.614734
Target:  5'- cGaAGGUGaGcGCCGgGCGCCAgaguUCGGGGa -3'
miRNA:   3'- aC-UCCACgC-CGGCgUGCGGU----GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 13106 0.67 0.614734
Target:  5'- aGAGGUcGCGGCgggucaCGCGCGCUcCCGcGa -3'
miRNA:   3'- aCUCCA-CGCCG------GCGUGCGGuGGCuCc -5'
29368 5' -61.9 NC_006151.1 + 58010 0.67 0.614734
Target:  5'- --cGGcGCGGCCGCG-GCCACCu--- -3'
miRNA:   3'- acuCCaCGCCGGCGUgCGGUGGcucc -5'
29368 5' -61.9 NC_006151.1 + 135489 0.67 0.604928
Target:  5'- -cGGGccagGCGGCgCGCG-GCCucgGCCGAGGc -3'
miRNA:   3'- acUCCa---CGCCG-GCGUgCGG---UGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.