miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29368 5' -61.9 NC_006151.1 + 27185 0.69 0.463223
Target:  5'- cGGGGcgccagGgGGCCGCGCagaaGgCGCCGGGGc -3'
miRNA:   3'- aCUCCa-----CgCCGGCGUG----CgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 28231 0.68 0.508869
Target:  5'- cGAGGggGCcgGGCCGaCGgGCCcauugGCCGGGGc -3'
miRNA:   3'- aCUCCa-CG--CCGGC-GUgCGG-----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 29061 0.66 0.644196
Target:  5'- cGAGuugGCGgcGCCGCGgGCC-CCGAGa -3'
miRNA:   3'- aCUCca-CGC--CGGCGUgCGGuGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 29215 0.71 0.386917
Target:  5'- cGGGGUGgGGaugggucaCCGCcgggucggccGCGCC-CCGAGGg -3'
miRNA:   3'- aCUCCACgCC--------GGCG----------UGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 29427 0.67 0.595141
Target:  5'- --cGGUGUGGCCGCGgggGgCGgCGGGGa -3'
miRNA:   3'- acuCCACGCCGGCGUg--CgGUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 29579 0.7 0.431723
Target:  5'- gGAGGacggaucgcggcggcUGCGGCCGCG-GCgGCgGGGGc -3'
miRNA:   3'- aCUCC---------------ACGCCGGCGUgCGgUGgCUCC- -5'
29368 5' -61.9 NC_006151.1 + 29685 0.7 0.411432
Target:  5'- cGGGGUGgGGgauCGCGgCACCGAGGg -3'
miRNA:   3'- aCUCCACgCCggcGUGCgGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 30436 0.7 0.411432
Target:  5'- gGAGG-GCGaGCCGC-CGCCGCCc--- -3'
miRNA:   3'- aCUCCaCGC-CGGCGuGCGGUGGcucc -5'
29368 5' -61.9 NC_006151.1 + 31583 0.68 0.544785
Target:  5'- cGGGGggGCGGCgCGCuccgcgcuccccCGCCGCCuGGGc -3'
miRNA:   3'- aCUCCa-CGCCG-GCGu-----------GCGGUGGcUCC- -5'
29368 5' -61.9 NC_006151.1 + 31752 0.69 0.471285
Target:  5'- cGGGGacgcgccUGCGGCgGCggGCGCgCGCCGGGcGg -3'
miRNA:   3'- aCUCC-------ACGCCGgCG--UGCG-GUGGCUC-C- -5'
29368 5' -61.9 NC_006151.1 + 33007 0.73 0.267088
Target:  5'- gUGGGuUGuCGGCUGUugGCCguugGCCGAGGa -3'
miRNA:   3'- -ACUCcAC-GCCGGCGugCGG----UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 33924 0.71 0.348256
Target:  5'- cGGcGG-GCGGaucgaggcCCGCGCGCC-CCGGGGg -3'
miRNA:   3'- aCU-CCaCGCC--------GGCGUGCGGuGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 35080 0.66 0.673579
Target:  5'- gGGGGUG-GGUCGCgugccgagcauGCGCCucgcgcccGCgCGAGGg -3'
miRNA:   3'- aCUCCACgCCGGCG-----------UGCGG--------UG-GCUCC- -5'
29368 5' -61.9 NC_006151.1 + 35193 0.68 0.512605
Target:  5'- aGAGGcgcGCGGgagacgccuCCGCGCGCCcauuggcccgggcgaGCCGAGa -3'
miRNA:   3'- aCUCCa--CGCC---------GGCGUGCGG---------------UGGCUCc -5'
29368 5' -61.9 NC_006151.1 + 35971 0.73 0.261062
Target:  5'- -----gGCGGCCGC-CGCCgcgGCCGAGGa -3'
miRNA:   3'- acuccaCGCCGGCGuGCGG---UGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 36078 0.7 0.394982
Target:  5'- --cGG-GCGGCCuCuucuccgacgACGCCGCCGAGGc -3'
miRNA:   3'- acuCCaCGCCGGcG----------UGCGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 36112 0.67 0.604928
Target:  5'- cGAGGccgccguccucGCGGCCGCGgccggaGCCA-CGAGGc -3'
miRNA:   3'- aCUCCa----------CGCCGGCGUg-----CGGUgGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 38084 0.7 0.405626
Target:  5'- gGAGGUGaCGGCCGCgcugcucGCGCUccgcgacgcgauccCCGGGGc -3'
miRNA:   3'- aCUCCAC-GCCGGCG-------UGCGGu-------------GGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 39103 0.67 0.575648
Target:  5'- cGAGGagcucUGC-GCCGaGC-CCGCCGAGGg -3'
miRNA:   3'- aCUCC-----ACGcCGGCgUGcGGUGGCUCC- -5'
29368 5' -61.9 NC_006151.1 + 39805 0.69 0.457888
Target:  5'- cUGGGGgcucggcgccccgcUGCGGCCcgucuucgucuccuGCG-GCCGCCGGGGc -3'
miRNA:   3'- -ACUCC--------------ACGCCGG--------------CGUgCGGUGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.