miRNA display CGI


Results 41 - 60 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 11052 0.67 0.428625
Target:  5'- gGCCCGGCcuggacgcGGGCCacaCUGUG-CGGCGGa -3'
miRNA:   3'- gCGGGCUG--------UCCGG---GACGCcGUCGCCg -5'
29369 3' -65 NC_006151.1 + 11215 0.69 0.327927
Target:  5'- gCGUCCGGgaaggcuucuccCGGGCCgCgaggGCcGCGGCGGCg -3'
miRNA:   3'- -GCGGGCU------------GUCCGG-Ga---CGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 11685 0.8 0.064099
Target:  5'- gCGCCCGACGGGgCCgcggGaCGGCGcguGCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCgGGa---C-GCCGU---CGCCG- -5'
29369 3' -65 NC_006151.1 + 15229 0.67 0.417755
Target:  5'- gCGCCCcucggcccccugcuGGCAGGCCCUGCucCAGCu-- -3'
miRNA:   3'- -GCGGG--------------CUGUCCGGGACGccGUCGccg -5'
29369 3' -65 NC_006151.1 + 15269 0.69 0.314078
Target:  5'- uCGCCCGAgCAGagcGCCCcGCuGcGCAGCGcGCu -3'
miRNA:   3'- -GCGGGCU-GUC---CGGGaCG-C-CGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 17119 0.72 0.229489
Target:  5'- gGCuCCGGCGgcGGUgCUGCGGgaGGCGGCc -3'
miRNA:   3'- gCG-GGCUGU--CCGgGACGCCg-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 17392 0.67 0.4371
Target:  5'- cCGCaCGACGGGgCgC-GUGGCGcGCGGCa -3'
miRNA:   3'- -GCGgGCUGUCCgG-GaCGCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 17471 0.67 0.420249
Target:  5'- uGCCgCGGCGuGUCCUcGuCGGCGGCGcGCc -3'
miRNA:   3'- gCGG-GCUGUcCGGGA-C-GCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 17911 0.69 0.334305
Target:  5'- aGCgCGGCGGcgcugaucgcgacGCCCaucaGGCAGCGGCg -3'
miRNA:   3'- gCGgGCUGUC-------------CGGGacg-CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 18670 0.68 0.401365
Target:  5'- uCGUCCGGCcguacggguuccacGGGCgCgcggGCGGCGcCGGCg -3'
miRNA:   3'- -GCGGGCUG--------------UCCGgGa---CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 19097 0.66 0.479955
Target:  5'- gGCUCGuacacguaguacaGCAGGCaCC-GCGGgGGCGcGCg -3'
miRNA:   3'- gCGGGC-------------UGUCCG-GGaCGCCgUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 19287 0.7 0.28772
Target:  5'- gGCCCacCGGGgCCaGCGGCgcgGGCGGCc -3'
miRNA:   3'- gCGGGcuGUCCgGGaCGCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 19377 0.66 0.498942
Target:  5'- gGCCCGugucguuggGCGuGGCCCgccgGaCGGUcagguGCGGCg -3'
miRNA:   3'- gCGGGC---------UGU-CCGGGa---C-GCCGu----CGCCG- -5'
29369 3' -65 NC_006151.1 + 19527 0.7 0.294142
Target:  5'- gGCCCagcacCAGGUCCggGUGGCAGgCGGUc -3'
miRNA:   3'- gCGGGcu---GUCCGGGa-CGCCGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 20130 0.7 0.28772
Target:  5'- gGCUggggGGCGGGCgCC-GCGGgGGCGGCg -3'
miRNA:   3'- gCGGg---CUGUCCG-GGaCGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 20306 0.73 0.185895
Target:  5'- gCGCCCGcCGuGGCgUUgGCGGCGGCGaGCa -3'
miRNA:   3'- -GCGGGCuGU-CCGgGA-CGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 20717 0.71 0.245834
Target:  5'- gCGUCCGGCGGGgCCggGCGcgagacgaacaGCAGcCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCgGGa-CGC-----------CGUC-GCCG- -5'
29369 3' -65 NC_006151.1 + 21049 0.68 0.403797
Target:  5'- aCGCCCccGACgcgcgGGGUCaggGCGGCcagggucagGGCGGCg -3'
miRNA:   3'- -GCGGG--CUG-----UCCGGga-CGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 21327 0.71 0.250922
Target:  5'- aCGCCCGGCgcggcggGGGUCC-GCGGCuggaaCGGCu -3'
miRNA:   3'- -GCGGGCUG-------UCCGGGaCGCCGuc---GCCG- -5'
29369 3' -65 NC_006151.1 + 21393 0.67 0.4371
Target:  5'- aCGgCCGGCGGGgCgaagggGCGGU-GCGGCg -3'
miRNA:   3'- -GCgGGCUGUCCgGga----CGCCGuCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.