miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 4788 0.68 0.372144
Target:  5'- gGCCCGGCcgcGGC---GCGGUAGCGGg -3'
miRNA:   3'- gCGGGCUGu--CCGggaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 4906 0.67 0.420249
Target:  5'- aGCCgGGCcaGGGCUCcccgagcgggGUGaGCAGCGGCc -3'
miRNA:   3'- gCGGgCUG--UCCGGGa---------CGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 5015 0.7 0.294142
Target:  5'- gGCCgGGCGGGCuCCgggGCcggggccggggaGGCcGCGGCg -3'
miRNA:   3'- gCGGgCUGUCCG-GGa--CG------------CCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 5089 0.75 0.132574
Target:  5'- gGCCgCGGCGGGCgCCgGCGGagaCGGUGGCg -3'
miRNA:   3'- gCGG-GCUGUCCG-GGaCGCC---GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 5242 0.67 0.411972
Target:  5'- cCGCgCGGCggcggcggGGGCCCggGgGGCGGagGGCg -3'
miRNA:   3'- -GCGgGCUG--------UCCGGGa-CgCCGUCg-CCG- -5'
29369 3' -65 NC_006151.1 + 5337 0.69 0.348802
Target:  5'- gGCCgCGGCGGagggcGCCCUcuccggcGCGGCGcCGGCg -3'
miRNA:   3'- gCGG-GCUGUC-----CGGGA-------CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 5522 0.66 0.487148
Target:  5'- gCGCCaaGCGGccgaggaucgagccGCCUcGCGGCGGCGGg -3'
miRNA:   3'- -GCGGgcUGUC--------------CGGGaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 5643 0.74 0.146177
Target:  5'- gCGCCgaGACcGGCCCgGCGGCGGgGGa -3'
miRNA:   3'- -GCGGg-CUGuCCGGGaCGCCGUCgCCg -5'
29369 3' -65 NC_006151.1 + 5997 0.7 0.269115
Target:  5'- aGCCCGACcggGGGaCCCgGCGGCcGgGGa -3'
miRNA:   3'- gCGGGCUG---UCC-GGGaCGCCGuCgCCg -5'
29369 3' -65 NC_006151.1 + 6135 0.67 0.454332
Target:  5'- gGCuCCGGCcgcGGCCgCgaggacgGCGGCcucggccucGGCGGCg -3'
miRNA:   3'- gCG-GGCUGu--CCGG-Ga------CGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 6266 0.75 0.132574
Target:  5'- gGCCgGACGcgauGCCCUcuuccucggccGCGGCGGCGGCc -3'
miRNA:   3'- gCGGgCUGUc---CGGGA-----------CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 6386 0.66 0.488954
Target:  5'- uGCCUGAgcgaggcCGGGCgCCgagcGCGGagagcgGGCGGCg -3'
miRNA:   3'- gCGGGCU-------GUCCG-GGa---CGCCg-----UCGCCG- -5'
29369 3' -65 NC_006151.1 + 7096 0.77 0.096047
Target:  5'- uGCCCGGCccGCUCUGCGGCcaucuuggccGCGGCg -3'
miRNA:   3'- gCGGGCUGucCGGGACGCCGu---------CGCCG- -5'
29369 3' -65 NC_006151.1 + 9036 0.66 0.489858
Target:  5'- cCGCCCGcCGGggcGCCCcGCGuGCuccGGgGGCg -3'
miRNA:   3'- -GCGGGCuGUC---CGGGaCGC-CG---UCgCCG- -5'
29369 3' -65 NC_006151.1 + 9127 0.76 0.114346
Target:  5'- uCGCCCGACAcucGGCCC-GCGGCAcGCGc- -3'
miRNA:   3'- -GCGGGCUGU---CCGGGaCGCCGU-CGCcg -5'
29369 3' -65 NC_006151.1 + 9471 0.73 0.194904
Target:  5'- gCGUCCG-CuucGGCCCcccGCGGCcGCGGCg -3'
miRNA:   3'- -GCGGGCuGu--CCGGGa--CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 10192 0.66 0.498942
Target:  5'- uCGCCgGuCGcGGCgCggGCGGCGGCuGCa -3'
miRNA:   3'- -GCGGgCuGU-CCGgGa-CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 10492 0.67 0.454332
Target:  5'- cCGCCCGGCGcGcGCCCgccGCcGCAGgcgcgucccCGGCg -3'
miRNA:   3'- -GCGGGCUGU-C-CGGGa--CGcCGUC---------GCCG- -5'
29369 3' -65 NC_006151.1 + 10556 0.7 0.269115
Target:  5'- cCGCCCGGC--GCCCaauggcGCGGCcggcucGGCGGCc -3'
miRNA:   3'- -GCGGGCUGucCGGGa-----CGCCG------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 10645 0.66 0.508101
Target:  5'- gGCgCGGCAuccccGCCCagGCGGCGGgGGa -3'
miRNA:   3'- gCGgGCUGUc----CGGGa-CGCCGUCgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.