miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 802 0.69 0.327927
Target:  5'- uCGUCCcGCcGGCCaaucgGUGGCAGCGGg -3'
miRNA:   3'- -GCGGGcUGuCCGGga---CGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 2102 0.68 0.379898
Target:  5'- gGCCCGAgCGGGCC--GCGGgGcCGGCc -3'
miRNA:   3'- gCGGGCU-GUCCGGgaCGCCgUcGCCG- -5'
29369 3' -65 NC_006151.1 + 2189 0.7 0.28392
Target:  5'- gCGCCCGaggcccccGCGGGCCgguggGUcuccacggcgcccccGGCGGCGGCg -3'
miRNA:   3'- -GCGGGC--------UGUCCGGga---CG---------------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 2279 0.74 0.168975
Target:  5'- aCGgCCGGCGGggcGCCCgcgGCGGCGaCGGCg -3'
miRNA:   3'- -GCgGGCUGUC---CGGGa--CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 2384 0.77 0.093671
Target:  5'- uCGgCCGGCAGGCCCUcGgGGCcGCGGa -3'
miRNA:   3'- -GCgGGCUGUCCGGGA-CgCCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 2411 0.72 0.219109
Target:  5'- aGCUCGGCgAGGCCCcgGCGGCcGCaGGa -3'
miRNA:   3'- gCGGGCUG-UCCGGGa-CGCCGuCG-CCg -5'
29369 3' -65 NC_006151.1 + 2588 0.73 0.194904
Target:  5'- aCGCgCUGGCgguAGGCgCgcgGCGGCAGCGGg -3'
miRNA:   3'- -GCG-GGCUG---UCCGgGa--CGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 3100 0.71 0.257259
Target:  5'- aGCgCCGAgAGGCCgCcGCGGC-GCGGg -3'
miRNA:   3'- gCG-GGCUgUCCGG-GaCGCCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 3145 0.7 0.273368
Target:  5'- gCGCCCucGGCGGGCUCggcGCagagcuccucguggGGCAGCGGg -3'
miRNA:   3'- -GCGGG--CUGUCCGGGa--CG--------------CCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 3246 0.68 0.3645
Target:  5'- gGCgCGGCggcggagcgGGGCgCC-GCGGCGcGCGGCg -3'
miRNA:   3'- gCGgGCUG---------UCCG-GGaCGCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 3548 0.71 0.240281
Target:  5'- gGUCCGgaGCGGGCCCgaguccgaGGgAGCGGCg -3'
miRNA:   3'- gCGGGC--UGUCCGGGacg-----CCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 3670 0.72 0.204293
Target:  5'- uCGCCguccccggggCGGCGGGCCCcG-GGCGcGCGGCg -3'
miRNA:   3'- -GCGG----------GCUGUCCGGGaCgCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 3720 0.68 0.356964
Target:  5'- cCGCUCGGgcgcUGGGUCCggGcCGGCGGCGGg -3'
miRNA:   3'- -GCGGGCU----GUCCGGGa-C-GCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 3952 0.74 0.153446
Target:  5'- gGCUCcGCGGGCCCgggccgcGCGGCGGCcucGGCg -3'
miRNA:   3'- gCGGGcUGUCCGGGa------CGCCGUCG---CCG- -5'
29369 3' -65 NC_006151.1 + 4022 0.68 0.403797
Target:  5'- gGCCgCGGCguAGGUCCagGCGGCcucGCGGg -3'
miRNA:   3'- gCGG-GCUG--UCCGGGa-CGCCGu--CGCCg -5'
29369 3' -65 NC_006151.1 + 4201 0.73 0.194904
Target:  5'- gGCa-GGCGGGCCCgaggGCGGCcGgGGCg -3'
miRNA:   3'- gCGggCUGUCCGGGa---CGCCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 4278 0.67 0.451723
Target:  5'- aCGCCgCGGCAGGCCaggacgcaggcguccGCcagcucgcggGGCAcGCGGCc -3'
miRNA:   3'- -GCGG-GCUGUCCGGga-------------CG----------CCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 4390 0.7 0.28772
Target:  5'- -cCCCGGCgcggGGGUCC-GCGGC-GCGGCc -3'
miRNA:   3'- gcGGGCUG----UCCGGGaCGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 4439 0.66 0.475486
Target:  5'- gGCCCGGCggAGGCUCUGCaGGaugaaggucUucugggugcgaucguAGCGGCg -3'
miRNA:   3'- gCGGGCUG--UCCGGGACG-CC---------G---------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 4526 0.73 0.18153
Target:  5'- gGCCCagaGCGGGUCCUG-GGCGGCcauGGCg -3'
miRNA:   3'- gCGGGc--UGUCCGGGACgCCGUCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.