miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 142313 0.66 0.498942
Target:  5'- aGCgCCGuAUggGGGCCC-GCGcGCucGCGGCg -3'
miRNA:   3'- gCG-GGC-UG--UCCGGGaCGC-CGu-CGCCG- -5'
29369 3' -65 NC_006151.1 + 142093 0.66 0.489858
Target:  5'- aCGCCCG-CAGGaCCUGCgcgGGCuG-GGUg -3'
miRNA:   3'- -GCGGGCuGUCCgGGACG---CCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 141955 0.69 0.349538
Target:  5'- uCGCCCcACGuccGGCUCUGCGGgAuccggucggGCGGCc -3'
miRNA:   3'- -GCGGGcUGU---CCGGGACGCCgU---------CGCCG- -5'
29369 3' -65 NC_006151.1 + 141659 0.66 0.514555
Target:  5'- gGCCCcGCGGGCUCguuguggaggcaugUcugccucccacgGCGGCuGGCGGCg -3'
miRNA:   3'- gCGGGcUGUCCGGG--------------A------------CGCCG-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 141605 0.72 0.216074
Target:  5'- cCGCCCGGCgaggcugccgggaucGGGCgggucgCUGCcGCGGCGGCg -3'
miRNA:   3'- -GCGGGCUG---------------UCCGg-----GACGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 140188 0.67 0.428625
Target:  5'- aCGCUgGACcccaucguGGCCaCcGCGGgGGCGGUg -3'
miRNA:   3'- -GCGGgCUGu-------CCGG-GaCGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 139671 1.11 0.000315
Target:  5'- cCGCCCGACAGGCCCUGCGGCAGCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCGGGACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 139567 0.66 0.480851
Target:  5'- gCGCCCGGuccgcgagcgccUGGGCUC-GCGcccccccgaGCGGCGGCc -3'
miRNA:   3'- -GCGGGCU------------GUCCGGGaCGC---------CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 139272 0.71 0.240281
Target:  5'- gCGCuCCGACGGcggacgcgccGCCCU-CGGCGucuGCGGCg -3'
miRNA:   3'- -GCG-GGCUGUC----------CGGGAcGCCGU---CGCCG- -5'
29369 3' -65 NC_006151.1 + 138783 0.66 0.489858
Target:  5'- uCGCCUGGC-GGCCgUcgcGUGGCuccucuacGCGGCc -3'
miRNA:   3'- -GCGGGCUGuCCGGgA---CGCCGu-------CGCCG- -5'
29369 3' -65 NC_006151.1 + 138327 0.7 0.275207
Target:  5'- uGCCUG-CGGGCCCggcacGCGcGCAGCccgccGGCc -3'
miRNA:   3'- gCGGGCuGUCCGGGa----CGC-CGUCG-----CCG- -5'
29369 3' -65 NC_006151.1 + 138097 0.67 0.454332
Target:  5'- uCGCCCGGCGcacGCCgCUgGCGGaCAugcugcGCGGCc -3'
miRNA:   3'- -GCGGGCUGUc--CGG-GA-CGCC-GU------CGCCG- -5'
29369 3' -65 NC_006151.1 + 137883 0.69 0.33288
Target:  5'- aGCCUG-CGGcuGCCCUucuucgccaaggucGaCGGCGGCGGCu -3'
miRNA:   3'- gCGGGCuGUC--CGGGA--------------C-GCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 137748 0.71 0.234833
Target:  5'- gGCgCCGACAcGGUCC-GCGGCcuGGCGcGCg -3'
miRNA:   3'- gCG-GGCUGU-CCGGGaCGCCG--UCGC-CG- -5'
29369 3' -65 NC_006151.1 + 137657 0.68 0.379898
Target:  5'- cCGuCCCGGCGGacgagcgcccGCCgUGCGGCuGCcGCg -3'
miRNA:   3'- -GC-GGGCUGUC----------CGGgACGCCGuCGcCG- -5'
29369 3' -65 NC_006151.1 + 137117 0.66 0.480851
Target:  5'- aCGCCUGGgGGcGCgCgacggcGCGGCGcgacGCGGCg -3'
miRNA:   3'- -GCGGGCUgUC-CGgGa-----CGCCGU----CGCCG- -5'
29369 3' -65 NC_006151.1 + 137080 0.67 0.4371
Target:  5'- gCGCaCCGGCgccAGGCCUUcGCGGU-GCuGGCc -3'
miRNA:   3'- -GCG-GGCUG---UCCGGGA-CGCCGuCG-CCG- -5'
29369 3' -65 NC_006151.1 + 136823 0.72 0.214071
Target:  5'- aCGCgCCGcGCGGGCUCUGCGaC-GCGGCc -3'
miRNA:   3'- -GCG-GGC-UGUCCGGGACGCcGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 136643 0.69 0.348802
Target:  5'- gCGCCCGugGGGCgCUcgccccucggggaGCGcGCGGCcGCc -3'
miRNA:   3'- -GCGGGCugUCCGgGA-------------CGC-CGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 136403 0.7 0.281408
Target:  5'- uGCCUGAgCggcuacgcgcgGGGCCCcGCGGCGGC-GCa -3'
miRNA:   3'- gCGGGCU-G-----------UCCGGGaCGCCGUCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.