miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 139671 1.11 0.000315
Target:  5'- cCGCCCGACAGGCCCUGCGGCAGCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCGGGACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 22684 0.88 0.015842
Target:  5'- uCGCCCGACAGGCCCgucuggGUGGUGGUGGUg -3'
miRNA:   3'- -GCGGGCUGUCCGGGa-----CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 71758 0.86 0.021669
Target:  5'- gCGCCgCG-CGuGGUCCUGCGGCAGCGGCg -3'
miRNA:   3'- -GCGG-GCuGU-CCGGGACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 66764 0.83 0.033617
Target:  5'- aCGCCgCGACGGccGCCCUcgggacgGCGGCGGCGGCg -3'
miRNA:   3'- -GCGG-GCUGUC--CGGGA-------CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 23334 0.82 0.041446
Target:  5'- uCGUCgGACAGGCCCUucuCGGCGGCGGUc -3'
miRNA:   3'- -GCGGgCUGUCCGGGAc--GCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 130706 0.82 0.042528
Target:  5'- gGCCCGACggggcggcccggGGGCCCgcGCGGCcGCGGCg -3'
miRNA:   3'- gCGGGCUG------------UCCGGGa-CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 56581 0.8 0.056415
Target:  5'- cCGCCCGACGGGCUggUGCGGacgcgcccCGGCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCGGg-ACGCC--------GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 36624 0.8 0.056415
Target:  5'- gGCCgGucuCGGcGCCCgGCGGCGGCGGCg -3'
miRNA:   3'- gCGGgCu--GUC-CGGGaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 11685 0.8 0.064099
Target:  5'- gCGCCCGACGGGgCCgcggGaCGGCGcguGCGGCg -3'
miRNA:   3'- -GCGGGCUGUCCgGGa---C-GCCGU---CGCCG- -5'
29369 3' -65 NC_006151.1 + 57126 0.79 0.069184
Target:  5'- gCGCCCGGCGGucGCCCcugcgcacGCGGCGGgGGCg -3'
miRNA:   3'- -GCGGGCUGUC--CGGGa-------CGCCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 51217 0.79 0.072788
Target:  5'- cCGCCCG-CGGGCCCgcgcagGCGGC-GCGaGCg -3'
miRNA:   3'- -GCGGGCuGUCCGGGa-----CGCCGuCGC-CG- -5'
29369 3' -65 NC_006151.1 + 73219 0.78 0.078533
Target:  5'- gGCCCG-CGGGCaCCUGgGGCAGCaucuGGCc -3'
miRNA:   3'- gCGGGCuGUCCG-GGACgCCGUCG----CCG- -5'
29369 3' -65 NC_006151.1 + 100312 0.78 0.082602
Target:  5'- gCGCCCGGggagggUGGGCCCUGCcugGGCAcGUGGCg -3'
miRNA:   3'- -GCGGGCU------GUCCGGGACG---CCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 128039 0.78 0.086871
Target:  5'- aCGCCCG-C-GGCagcgGCGGCAGCGGCg -3'
miRNA:   3'- -GCGGGCuGuCCGgga-CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 69971 0.77 0.09135
Target:  5'- gGCCgCG-CGGGCgCUGCaGCGGCGGCa -3'
miRNA:   3'- gCGG-GCuGUCCGgGACGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 112044 0.77 0.09135
Target:  5'- gGgCCGGCGGGCgg-GCGGCGGCGGUg -3'
miRNA:   3'- gCgGGCUGUCCGggaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 2384 0.77 0.093671
Target:  5'- uCGgCCGGCAGGCCCUcGgGGCcGCGGa -3'
miRNA:   3'- -GCgGGCUGUCCGGGA-CgCCGuCGCCg -5'
29369 3' -65 NC_006151.1 + 7096 0.77 0.096047
Target:  5'- uGCCCGGCccGCUCUGCGGCcaucuuggccGCGGCg -3'
miRNA:   3'- gCGGGCUGucCGGGACGCCGu---------CGCCG- -5'
29369 3' -65 NC_006151.1 + 52375 0.77 0.098481
Target:  5'- gCGCCCccgGGGCCC-GCGGgGGCGGCg -3'
miRNA:   3'- -GCGGGcugUCCGGGaCGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 23129 0.77 0.100972
Target:  5'- gCGCCCcuccuccgucGcCGGGCCCUcgGCGGgAGCGGCg -3'
miRNA:   3'- -GCGGG----------CuGUCCGGGA--CGCCgUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.