miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 90715 0.76 0.106135
Target:  5'- cCGCCCcGCAGGCggcggcgaCgGUGGCGGCGGCg -3'
miRNA:   3'- -GCGGGcUGUCCGg-------GaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 105209 0.76 0.106135
Target:  5'- gCGCCaggaGGCGGacaCgCUGCGGCAGCGGCu -3'
miRNA:   3'- -GCGGg---CUGUCc--GgGACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 55401 0.76 0.106135
Target:  5'- gCGCCUGcgcgaGCAGGCCCUGCGcGCcgcgcaGGCGGg -3'
miRNA:   3'- -GCGGGC-----UGUCCGGGACGC-CG------UCGCCg -5'
29369 3' -65 NC_006151.1 + 31742 0.76 0.108809
Target:  5'- gCGCCCGcgcCGGGgacgcgCCUGCGGCGGCGGg -3'
miRNA:   3'- -GCGGGCu--GUCCg-----GGACGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 40515 0.76 0.111545
Target:  5'- -cCCCGGCcggAGGUggCUGCGGCGGCGGCg -3'
miRNA:   3'- gcGGGCUG---UCCGg-GACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 109027 0.76 0.111545
Target:  5'- uGCuCCaACGGGCCCaccgGCGGCAGCaGCa -3'
miRNA:   3'- gCG-GGcUGUCCGGGa---CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 65026 0.76 0.111545
Target:  5'- gGCCCaccucguacGGCaggGGGCCCgGCGGCGGCGGg -3'
miRNA:   3'- gCGGG---------CUG---UCCGGGaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 9127 0.76 0.114346
Target:  5'- uCGCCCGACAcucGGCCC-GCGGCAcGCGc- -3'
miRNA:   3'- -GCGGGCUGU---CCGGGaCGCCGU-CGCcg -5'
29369 3' -65 NC_006151.1 + 39139 0.76 0.117212
Target:  5'- gCGCCCGGCcuGGGaCCC-GCGccGCGGCGGCc -3'
miRNA:   3'- -GCGGGCUG--UCC-GGGaCGC--CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 109311 0.76 0.117212
Target:  5'- cCGCCuCGGC-GGCagCaGCGGCGGCGGCa -3'
miRNA:   3'- -GCGG-GCUGuCCGg-GaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 60094 0.76 0.117212
Target:  5'- cCGCCgCGAac-GCCggGCGGCAGCGGCg -3'
miRNA:   3'- -GCGG-GCUgucCGGgaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 135481 0.76 0.117212
Target:  5'- uGUCCGcGCGGGCCagGCGGCGcGCGGCc -3'
miRNA:   3'- gCGGGC-UGUCCGGgaCGCCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 104267 0.76 0.122844
Target:  5'- aCGCCggcgcggCGGCGGGCCCgccgcugcagGCGcuGCAGCGGCu -3'
miRNA:   3'- -GCGG-------GCUGUCCGGGa---------CGC--CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 128538 0.75 0.126218
Target:  5'- gGCCaCGGCGGGCCC-GcCGGC-GCGGUg -3'
miRNA:   3'- gCGG-GCUGUCCGGGaC-GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 6266 0.75 0.132574
Target:  5'- gGCCgGACGcgauGCCCUcuuccucggccGCGGCGGCGGCc -3'
miRNA:   3'- gCGGgCUGUc---CGGGA-----------CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 5089 0.75 0.132574
Target:  5'- gGCCgCGGCGGGCgCCgGCGGagaCGGUGGCg -3'
miRNA:   3'- gCGG-GCUGUCCG-GGaCGCC---GUCGCCG- -5'
29369 3' -65 NC_006151.1 + 133334 0.75 0.135861
Target:  5'- gCGCCgGGCGgccGGUUCcGCGGCGGCGGUg -3'
miRNA:   3'- -GCGGgCUGU---CCGGGaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 57216 0.75 0.135861
Target:  5'- cCGCUCGACgAGGCCgUcGCaGGCGGCGcGCg -3'
miRNA:   3'- -GCGGGCUG-UCCGGgA-CG-CCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 97483 0.75 0.138883
Target:  5'- cCGCCaCGuggacgcGCAGcGCCUcGCGGCGGUGGCg -3'
miRNA:   3'- -GCGG-GC-------UGUC-CGGGaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 48717 0.74 0.145822
Target:  5'- cCGCCCGGCccgcgaaGGGCacgCCcGCGGCgucGGCGGCa -3'
miRNA:   3'- -GCGGGCUG-------UCCG---GGaCGCCG---UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.