miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 38538 0.66 0.496209
Target:  5'- gGCCCGGaccCAGcGCCCgaGCGGCGcaagaagaagcgccGCGcGCc -3'
miRNA:   3'- gCGGGCU---GUC-CGGGa-CGCCGU--------------CGC-CG- -5'
29369 3' -65 NC_006151.1 + 103231 0.66 0.496209
Target:  5'- gCGCgCGAUggAGGaCCugCUGCGGCacauccgcgccaugGGCGGCc -3'
miRNA:   3'- -GCGgGCUG--UCC-GG--GACGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 54491 0.66 0.496209
Target:  5'- aCGCUgcaGAU-GGCCCUccuggacuuugugcGCGGCAucGCGGCc -3'
miRNA:   3'- -GCGGg--CUGuCCGGGA--------------CGCCGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 138783 0.66 0.489858
Target:  5'- uCGCCUGGC-GGCCgUcgcGUGGCuccucuacGCGGCc -3'
miRNA:   3'- -GCGGGCUGuCCGGgA---CGCCGu-------CGCCG- -5'
29369 3' -65 NC_006151.1 + 49243 0.66 0.489858
Target:  5'- cCGCUCGGCugggcgcGGCUCgUGCGcGCcgucguccAGCGGCu -3'
miRNA:   3'- -GCGGGCUGu------CCGGG-ACGC-CG--------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 36102 0.66 0.489858
Target:  5'- cCGCCgaGGCcgAGGCcgccguCCUcGCGGCcGCGGCc -3'
miRNA:   3'- -GCGGg-CUG--UCCG------GGA-CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 9036 0.66 0.489858
Target:  5'- cCGCCCGcCGGggcGCCCcGCGuGCuccGGgGGCg -3'
miRNA:   3'- -GCGGGCuGUC---CGGGaCGC-CG---UCgCCG- -5'
29369 3' -65 NC_006151.1 + 142093 0.66 0.489858
Target:  5'- aCGCCCG-CAGGaCCUGCgcgGGCuG-GGUg -3'
miRNA:   3'- -GCGGGCuGUCCgGGACG---CCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 89157 0.66 0.489858
Target:  5'- gCGCCCGccucgggcgagGCGGGCgCgGgGGuCGGgGGCg -3'
miRNA:   3'- -GCGGGC-----------UGUCCGgGaCgCC-GUCgCCG- -5'
29369 3' -65 NC_006151.1 + 6386 0.66 0.488954
Target:  5'- uGCCUGAgcgaggcCGGGCgCCgagcGCGGagagcgGGCGGCg -3'
miRNA:   3'- gCGGGCU-------GUCCG-GGa---CGCCg-----UCGCCG- -5'
29369 3' -65 NC_006151.1 + 5522 0.66 0.487148
Target:  5'- gCGCCaaGCGGccgaggaucgagccGCCUcGCGGCGGCGGg -3'
miRNA:   3'- -GCGGgcUGUC--------------CGGGaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 37007 0.66 0.486246
Target:  5'- cCGCCCccCGGGCCCccgccgccgccgcGCGGCGcuCGGCc -3'
miRNA:   3'- -GCGGGcuGUCCGGGa------------CGCCGUc-GCCG- -5'
29369 3' -65 NC_006151.1 + 139567 0.66 0.480851
Target:  5'- gCGCCCGGuccgcgagcgccUGGGCUC-GCGcccccccgaGCGGCGGCc -3'
miRNA:   3'- -GCGGGCU------------GUCCGGGaCGC---------CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 137117 0.66 0.480851
Target:  5'- aCGCCUGGgGGcGCgCgacggcGCGGCGcgacGCGGCg -3'
miRNA:   3'- -GCGGGCUgUC-CGgGa-----CGCCGU----CGCCG- -5'
29369 3' -65 NC_006151.1 + 121300 0.66 0.480851
Target:  5'- cCGaCCgCGACGGGCgCUggagcGUGGaGGCGGCc -3'
miRNA:   3'- -GC-GG-GCUGUCCGgGA-----CGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 101396 0.66 0.480851
Target:  5'- gCGCCuucuuCGAC-GGCCuCUGgGcGCAGCGcGCc -3'
miRNA:   3'- -GCGG-----GCUGuCCGG-GACgC-CGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 99076 0.66 0.480851
Target:  5'- gCGCCCG---GGCaCC-GUGGC-GCGGCg -3'
miRNA:   3'- -GCGGGCuguCCG-GGaCGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 71390 0.66 0.480851
Target:  5'- uGCCCGACGGGCuguuugCCUGagGGgAGgacgGGCg -3'
miRNA:   3'- gCGGGCUGUCCG------GGACg-CCgUCg---CCG- -5'
29369 3' -65 NC_006151.1 + 100416 0.66 0.480851
Target:  5'- gCGCgCCGACgcggGGGCgCUGCG-CGGCgugauGGCg -3'
miRNA:   3'- -GCG-GGCUG----UCCGgGACGCcGUCG-----CCG- -5'
29369 3' -65 NC_006151.1 + 19097 0.66 0.479955
Target:  5'- gGCUCGuacacguaguacaGCAGGCaCC-GCGGgGGCGcGCg -3'
miRNA:   3'- gCGGGC-------------UGUCCG-GGaCGCCgUCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.