miRNA display CGI


Results 41 - 60 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 19097 0.66 0.479955
Target:  5'- gGCUCGuacacguaguacaGCAGGCaCC-GCGGgGGCGcGCg -3'
miRNA:   3'- gCGGGC-------------UGUCCG-GGaCGCCgUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 4439 0.66 0.475486
Target:  5'- gGCCCGGCggAGGCUCUGCaGGaugaaggucUucugggugcgaucguAGCGGCg -3'
miRNA:   3'- gCGGGCUG--UCCGGGACG-CC---------G---------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 117800 0.66 0.472815
Target:  5'- aCGCCCGGCggggcgGGGCCCcacgcuuuaagaccCGGCcGgGGCg -3'
miRNA:   3'- -GCGGGCUG------UCCGGGac------------GCCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 132440 0.66 0.471926
Target:  5'- gCGCCUGcgcguGCAGGUagcgcagcaCCgcGCGGCAGUaGGCg -3'
miRNA:   3'- -GCGGGC-----UGUCCG---------GGa-CGCCGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 59212 0.66 0.471926
Target:  5'- aCGCgCG-UGGGCCCcgggaacgucUGcCGGCuGCGGCc -3'
miRNA:   3'- -GCGgGCuGUCCGGG----------AC-GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 66055 0.66 0.471926
Target:  5'- uGCCUGucCAGGaCCCcGCGGaCGGCcGCc -3'
miRNA:   3'- gCGGGCu-GUCC-GGGaCGCC-GUCGcCG- -5'
29369 3' -65 NC_006151.1 + 102679 0.66 0.471038
Target:  5'- aCGCCguggacgCGGgGGcGCCCggcgcggGCGGC-GCGGCc -3'
miRNA:   3'- -GCGG-------GCUgUC-CGGGa------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 102505 0.66 0.469265
Target:  5'- aCGCCgCGGCgcGGGaCCCcgGCGGCgucuacgaccagacGGUGGUg -3'
miRNA:   3'- -GCGG-GCUG--UCC-GGGa-CGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 81399 0.66 0.469265
Target:  5'- nCGCCCaGGuuGGCCaggGUGGCGuccccgccgaggucGCGGCg -3'
miRNA:   3'- -GCGGG-CUguCCGGga-CGCCGU--------------CGCCG- -5'
29369 3' -65 NC_006151.1 + 23919 0.66 0.463085
Target:  5'- gGCCCGACGGGCCgCcggucgucGUGGaCGG-GGUg -3'
miRNA:   3'- gCGGGCUGUCCGG-Ga-------CGCC-GUCgCCG- -5'
29369 3' -65 NC_006151.1 + 51482 0.66 0.463085
Target:  5'- aGCCCGACuGcGCCCaGCcgccgGGCAGCu-- -3'
miRNA:   3'- gCGGGCUGuC-CGGGaCG-----CCGUCGccg -5'
29369 3' -65 NC_006151.1 + 65640 0.66 0.463085
Target:  5'- uCGCCCGugAGGUCgagggucgcguaCUGCaggucguccGGCA-CGGCg -3'
miRNA:   3'- -GCGGGCugUCCGG------------GACG---------CCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 75205 0.66 0.463085
Target:  5'- aGCCCGACgaGGGCgUCgggGCGcGCGuCGGCc -3'
miRNA:   3'- gCGGGCUG--UCCG-GGa--CGC-CGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 68288 0.66 0.463085
Target:  5'- gCGCCaCGGCGGccaggcgcgcGCCCacGaCGGCgagGGCGGCg -3'
miRNA:   3'- -GCGG-GCUGUC----------CGGGa-C-GCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 118749 0.66 0.463085
Target:  5'- gGCCCGGC-GGCCgUGCcacgcGCGuGCGGa -3'
miRNA:   3'- gCGGGCUGuCCGGgACGc----CGU-CGCCg -5'
29369 3' -65 NC_006151.1 + 64521 0.67 0.454332
Target:  5'- cCGCCaa--AGGCCgCcGCGGCcgcgucgggGGCGGCg -3'
miRNA:   3'- -GCGGgcugUCCGG-GaCGCCG---------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 44879 0.67 0.454332
Target:  5'- uCGCCCGACcucGGCggUgUGCGGUGGUGuGUg -3'
miRNA:   3'- -GCGGGCUGu--CCG--GgACGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 10492 0.67 0.454332
Target:  5'- cCGCCCGGCGcGcGCCCgccGCcGCAGgcgcgucccCGGCg -3'
miRNA:   3'- -GCGGGCUGU-C-CGGGa--CGcCGUC---------GCCG- -5'
29369 3' -65 NC_006151.1 + 138097 0.67 0.454332
Target:  5'- uCGCCCGGCGcacGCCgCUgGCGGaCAugcugcGCGGCc -3'
miRNA:   3'- -GCGGGCUGUc--CGG-GA-CGCC-GU------CGCCG- -5'
29369 3' -65 NC_006151.1 + 6135 0.67 0.454332
Target:  5'- gGCuCCGGCcgcGGCCgCgaggacgGCGGCcucggccucGGCGGCg -3'
miRNA:   3'- gCG-GGCUGu--CCGG-Ga------CGCCG---------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.