miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 20897 0.66 0.736282
Target:  5'- aGGC-GCAGCAGCuccacGCGCCcGCuGUAg -3'
miRNA:   3'- gUUGuCGUCGUCGu----CGCGGuCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 21966 0.82 0.090974
Target:  5'- aCAuCGGCGuGguGCGGCGCCGGCAGCGc -3'
miRNA:   3'- -GUuGUCGU-CguCGUCGCGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 22344 0.71 0.461967
Target:  5'- cCAAUAGCgcugcgAGCAGCauGGCGCUGGCAGg- -3'
miRNA:   3'- -GUUGUCG------UCGUCG--UCGCGGUCGUCgu -5'
29369 5' -58.1 NC_006151.1 + 25311 0.68 0.642894
Target:  5'- gAACGGguGCGGUgugaaugAGCGCCGGgaCGGCc -3'
miRNA:   3'- gUUGUCguCGUCG-------UCGCGGUC--GUCGu -5'
29369 5' -58.1 NC_006151.1 + 25368 0.69 0.591858
Target:  5'- gAugGGaGGCGGCGGUGaCGGCGGCGg -3'
miRNA:   3'- gUugUCgUCGUCGUCGCgGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 26352 0.66 0.716172
Target:  5'- gGGCGGCGGCgGGCcGCGUCGG-GGCGc -3'
miRNA:   3'- gUUGUCGUCG-UCGuCGCGGUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 27008 0.67 0.706
Target:  5'- gCGAgAGCuGgAGCAGgGCCuGcCAGCAg -3'
miRNA:   3'- -GUUgUCGuCgUCGUCgCGGuC-GUCGU- -5'
29369 5' -58.1 NC_006151.1 + 29590 0.72 0.381352
Target:  5'- -cGCGGCGGCuGCGGC-CgCGGCGGCGg -3'
miRNA:   3'- guUGUCGUCGuCGUCGcG-GUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 30338 0.7 0.48108
Target:  5'- ---aGGCGGCGGCGGCGCgAG-GGCGc -3'
miRNA:   3'- guugUCGUCGUCGUCGCGgUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 30892 0.72 0.407177
Target:  5'- aGGCGGCGagcggagcgcGCGGUAGCGCCcgcgGGCGGCc -3'
miRNA:   3'- gUUGUCGU----------CGUCGUCGCGG----UCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 31764 0.74 0.318017
Target:  5'- -uGCGGCGGCgGGCGcGCGCCGgGCGGCu -3'
miRNA:   3'- guUGUCGUCG-UCGU-CGCGGU-CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 36015 0.79 0.139417
Target:  5'- cCGACGGCGGCAGCcagggcucccGGCGCC-GCGGCu -3'
miRNA:   3'- -GUUGUCGUCGUCG----------UCGCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 36172 0.81 0.109814
Target:  5'- cCAGCAGCAGCAGCAGCcccGCCGG-GGCu -3'
miRNA:   3'- -GUUGUCGUCGUCGUCG---CGGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 36362 0.7 0.494684
Target:  5'- cCGGCAGCAcucGCAGCGGCagaggccggggcccCCGGCGGCc -3'
miRNA:   3'- -GUUGUCGU---CGUCGUCGc-------------GGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 36521 0.71 0.461967
Target:  5'- cCGGCGGC-GCGGCcucggaccccGGCGCCAcCAGCAc -3'
miRNA:   3'- -GUUGUCGuCGUCG----------UCGCGGUcGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 36563 0.82 0.090974
Target:  5'- gCAGCGGUGGCcGCAGCGCCGGCAcgGCGg -3'
miRNA:   3'- -GUUGUCGUCGuCGUCGCGGUCGU--CGU- -5'
29369 5' -58.1 NC_006151.1 + 36639 0.67 0.692681
Target:  5'- --cCGGCGGCGGCGGCGCCcccuccgccggaggGGaCcGCGg -3'
miRNA:   3'- guuGUCGUCGUCGUCGCGG--------------UC-GuCGU- -5'
29369 5' -58.1 NC_006151.1 + 36943 0.78 0.176175
Target:  5'- -cGCGGCuuCAGCAGCuCCAGCAGCAg -3'
miRNA:   3'- guUGUCGucGUCGUCGcGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 38136 0.66 0.765718
Target:  5'- cCGGCcgAGCGGCGGCAG-GCC-GCGGa- -3'
miRNA:   3'- -GUUG--UCGUCGUCGUCgCGGuCGUCgu -5'
29369 5' -58.1 NC_006151.1 + 38358 0.72 0.372989
Target:  5'- gAGCAGCccGGCcucgucgucccAGCgccGGCGCCGGCGGCGg -3'
miRNA:   3'- gUUGUCG--UCG-----------UCG---UCGCGGUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.