miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 5245 0.69 0.591858
Target:  5'- -cGCGGCGGCGGCgGGgGCCcgGGgGGCGg -3'
miRNA:   3'- guUGUCGUCGUCG-UCgCGG--UCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 5341 0.68 0.632464
Target:  5'- gCGGCGGagggcgcccucucCGGC-GCGGCGCCGGCGGg- -3'
miRNA:   3'- -GUUGUC-------------GUCGuCGUCGCGGUCGUCgu -5'
29369 5' -58.1 NC_006151.1 + 6155 0.7 0.510443
Target:  5'- gGACGGCGGCcuCGGCcUCGGCGGCGu -3'
miRNA:   3'- gUUGUCGUCGucGUCGcGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 6226 0.67 0.664759
Target:  5'- ---gAGgAGCcGCGGCGCCGGgAGCc -3'
miRNA:   3'- guugUCgUCGuCGUCGCGGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 6289 0.77 0.185439
Target:  5'- uCGGCcGCGGCGGCGGcCGCCAGgAGCu -3'
miRNA:   3'- -GUUGuCGUCGUCGUC-GCGGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 8679 0.66 0.756016
Target:  5'- cCGACGGUGGUGGCcGgGCgGGCGGUc -3'
miRNA:   3'- -GUUGUCGUCGUCGuCgCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 10012 0.8 0.125449
Target:  5'- gAGCGGCGGCGGCGGuCGCC-GCGGCc -3'
miRNA:   3'- gUUGUCGUCGUCGUC-GCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 10200 0.7 0.530428
Target:  5'- -cGCGGCgcgGGCGGCGGCuGCagaGGCGGCu -3'
miRNA:   3'- guUGUCG---UCGUCGUCG-CGg--UCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 10709 0.67 0.685472
Target:  5'- ----cGC-GCAccGCGGCGCCAGCAGgAa -3'
miRNA:   3'- guuguCGuCGU--CGUCGCGGUCGUCgU- -5'
29369 5' -58.1 NC_006151.1 + 11689 0.66 0.726269
Target:  5'- cCGACggGGCcGCGGgaCGGCGCguGCGGCGc -3'
miRNA:   3'- -GUUG--UCGuCGUC--GUCGCGguCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 17123 0.68 0.602243
Target:  5'- --cCGGCGGCGGUgcugcgggaGGCgGCCAGgAGCAc -3'
miRNA:   3'- guuGUCGUCGUCG---------UCG-CGGUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 17409 0.8 0.128814
Target:  5'- uGGCGcGCGGCAGCAGgGCCAGCgAGCc -3'
miRNA:   3'- gUUGU-CGUCGUCGUCgCGGUCG-UCGu -5'
29369 5' -58.1 NC_006151.1 + 17822 0.66 0.736282
Target:  5'- ---gGGC-GCGGCGGgGCgGGCGGCc -3'
miRNA:   3'- guugUCGuCGUCGUCgCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 17891 0.72 0.398447
Target:  5'- cCGACAGCgAGCAGaugacCAGCGC-GGCGGCGc -3'
miRNA:   3'- -GUUGUCG-UCGUC-----GUCGCGgUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 17941 0.72 0.407177
Target:  5'- aGGCAGCGGCGGCgucuccGGCGCCcGCcugccGGCGu -3'
miRNA:   3'- gUUGUCGUCGUCG------UCGCGGuCG-----UCGU- -5'
29369 5' -58.1 NC_006151.1 + 18554 0.66 0.765718
Target:  5'- gAACGGCcGCgaGGCcGC-CCGGCGGCGg -3'
miRNA:   3'- gUUGUCGuCG--UCGuCGcGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 19277 0.68 0.622033
Target:  5'- uGGCGcGCGGggcccaccggggcCAGCGGCGCgGGCGGCc -3'
miRNA:   3'- gUUGU-CGUC-------------GUCGUCGCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 19882 0.72 0.389838
Target:  5'- gGAgAGCgccagGGcCAGCAGCGCCAGgAGCu -3'
miRNA:   3'- gUUgUCG-----UC-GUCGUCGCGGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 20613 0.7 0.529422
Target:  5'- aCGACGGCgugggguGGUGGgGGCGCCcccugGGCGGCAc -3'
miRNA:   3'- -GUUGUCG-------UCGUCgUCGCGG-----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 20743 0.74 0.318017
Target:  5'- gAACAGCAGcCGGC-GCGCCuccaccGCGGCGg -3'
miRNA:   3'- gUUGUCGUC-GUCGuCGCGGu-----CGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.