miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 87476 0.78 0.171699
Target:  5'- --cCAGCAGCGGCAGcCGCC-GCGGCc -3'
miRNA:   3'- guuGUCGUCGUCGUC-GCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 40564 0.78 0.171699
Target:  5'- aAGCGGCGGCGGCGGCcgcggcggaggGCuCGGCGGCGg -3'
miRNA:   3'- gUUGUCGUCGUCGUCG-----------CG-GUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 36943 0.78 0.176175
Target:  5'- -cGCGGCuuCAGCAGCuCCAGCAGCAg -3'
miRNA:   3'- guUGUCGucGUCGUCGcGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 139513 0.78 0.180755
Target:  5'- gGACAGCGGCaacAGCAGCGgCAGCgaGGCGu -3'
miRNA:   3'- gUUGUCGUCG---UCGUCGCgGUCG--UCGU- -5'
29369 5' -58.1 NC_006151.1 + 139675 0.77 0.185439
Target:  5'- cCGACAgGCccuGCGGCAGCGgCGGCGGCAn -3'
miRNA:   3'- -GUUGU-CGu--CGUCGUCGCgGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 6289 0.77 0.185439
Target:  5'- uCGGCcGCGGCGGCGGcCGCCAGgAGCu -3'
miRNA:   3'- -GUUGuCGUCGUCGUC-GCGGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 132040 0.77 0.190231
Target:  5'- cCGGCGGCGcGCGGCAGCGCggcggagaaCGGCGGCu -3'
miRNA:   3'- -GUUGUCGU-CGUCGUCGCG---------GUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 58835 0.77 0.19513
Target:  5'- gCGGCA-CAGCAGguGCGCCAGC-GCGu -3'
miRNA:   3'- -GUUGUcGUCGUCguCGCGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 49838 0.77 0.20014
Target:  5'- aCGACGGCGGCGGCGggcccGCGCUgggcGCAGCAc -3'
miRNA:   3'- -GUUGUCGUCGUCGU-----CGCGGu---CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 54117 0.77 0.209967
Target:  5'- nGACGGCGGCGGCuGCGgacgggcucugccCCGGCGGCGc -3'
miRNA:   3'- gUUGUCGUCGUCGuCGC-------------GGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 109908 0.77 0.210496
Target:  5'- gCGGCGGCAGCAGCAGagaccuccgcCGCCGGCcucuccccugGGCGg -3'
miRNA:   3'- -GUUGUCGUCGUCGUC----------GCGGUCG----------UCGU- -5'
29369 5' -58.1 NC_006151.1 + 63477 0.76 0.220758
Target:  5'- gCAGgGGCGGCGGCGGCGCCcgaagaaGGUGGCc -3'
miRNA:   3'- -GUUgUCGUCGUCGUCGCGG-------UCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 131909 0.76 0.226892
Target:  5'- aCGGgGGCGGCAGCAGgGCCuccGCGGUg -3'
miRNA:   3'- -GUUgUCGUCGUCGUCgCGGu--CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 132123 0.76 0.226892
Target:  5'- gAGCGGCAGgccCAGCucGCGCCGGCGGUg -3'
miRNA:   3'- gUUGUCGUC---GUCGu-CGCGGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 69057 0.76 0.238415
Target:  5'- --cCGGCAGCGGCGGCuccucgucccCCAGCGGCAc -3'
miRNA:   3'- guuGUCGUCGUCGUCGc---------GGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 51983 0.76 0.244357
Target:  5'- aGGCgAGCAGCuccGCGGUGCCGGCGuGCAg -3'
miRNA:   3'- gUUG-UCGUCGu--CGUCGCGGUCGU-CGU- -5'
29369 5' -58.1 NC_006151.1 + 55387 0.75 0.262925
Target:  5'- gAGCAGgAGguGCGGCGCCuGCgcgAGCAg -3'
miRNA:   3'- gUUGUCgUCguCGUCGCGGuCG---UCGU- -5'
29369 5' -58.1 NC_006151.1 + 57516 0.75 0.262925
Target:  5'- -cGCGGCGGCGGCGGcCGCCuccggcGCGGCc -3'
miRNA:   3'- guUGUCGUCGUCGUC-GCGGu-----CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 135086 0.75 0.262925
Target:  5'- gGGCGGgGGCGGCGGgGCCgggcgGGCGGCGg -3'
miRNA:   3'- gUUGUCgUCGUCGUCgCGG-----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 130880 0.75 0.262925
Target:  5'- aGugGGCGGCGGCGGUGgaGGCGGCGg -3'
miRNA:   3'- gUugUCGUCGUCGUCGCggUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.