miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 66946 0.66 0.746201
Target:  5'- gCAAaGGCGGCGGCGG-GCgCGGCAcGCu -3'
miRNA:   3'- -GUUgUCGUCGUCGUCgCG-GUCGU-CGu -5'
29369 5' -58.1 NC_006151.1 + 130365 0.66 0.746201
Target:  5'- uGACGGCcGCGcgcgccGCGGCGuCCAGC-GCGa -3'
miRNA:   3'- gUUGUCGuCGU------CGUCGC-GGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 64245 0.66 0.745214
Target:  5'- gCGACGGCGGC-GCGG-GCCAcgcucucguugacGCGGCc -3'
miRNA:   3'- -GUUGUCGUCGuCGUCgCGGU-------------CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 65050 0.66 0.743236
Target:  5'- --cCGGCGGCGGCgGGCGCCcGUuaauaaaguccaucAGCAc -3'
miRNA:   3'- guuGUCGUCGUCG-UCGCGGuCG--------------UCGU- -5'
29369 5' -58.1 NC_006151.1 + 130441 0.66 0.736282
Target:  5'- gGACu---GCAGCGGCGCCAGaaacauGGCGu -3'
miRNA:   3'- gUUGucguCGUCGUCGCGGUCg-----UCGU- -5'
29369 5' -58.1 NC_006151.1 + 17822 0.66 0.736282
Target:  5'- ---gGGC-GCGGCGGgGCgGGCGGCc -3'
miRNA:   3'- guugUCGuCGUCGUCgCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 20897 0.66 0.736282
Target:  5'- aGGC-GCAGCAGCuccacGCGCCcGCuGUAg -3'
miRNA:   3'- gUUGuCGUCGUCGu----CGCGGuCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 53670 0.66 0.736282
Target:  5'- gGGCAcgcGUAGCuGUAGCGCCcgAGCuGCGc -3'
miRNA:   3'- gUUGU---CGUCGuCGUCGCGG--UCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 54633 0.66 0.736282
Target:  5'- cCGGgGGgaAGCGGCGGCGCgAGCGcuGCGu -3'
miRNA:   3'- -GUUgUCg-UCGUCGUCGCGgUCGU--CGU- -5'
29369 5' -58.1 NC_006151.1 + 44586 0.66 0.736282
Target:  5'- -cGCuGCAGCGGCGGaCGCauCAGCGuGCc -3'
miRNA:   3'- guUGuCGUCGUCGUC-GCG--GUCGU-CGu -5'
29369 5' -58.1 NC_006151.1 + 2473 0.66 0.726269
Target:  5'- cCAGCGGuUGGCcgcGCGGUGCCcgaaGGCGGCGc -3'
miRNA:   3'- -GUUGUC-GUCGu--CGUCGCGG----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 11689 0.66 0.726269
Target:  5'- cCGACggGGCcGCGGgaCGGCGCguGCGGCGc -3'
miRNA:   3'- -GUUG--UCGuCGUC--GUCGCGguCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 52389 0.66 0.726269
Target:  5'- -cGCGGgGGCGGCgGGCGCC-GCcGCGc -3'
miRNA:   3'- guUGUCgUCGUCG-UCGCGGuCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 96221 0.66 0.726269
Target:  5'- uGGCGGCGGCcGCGGCGa-GGC-GCAc -3'
miRNA:   3'- gUUGUCGUCGuCGUCGCggUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 64549 0.66 0.726269
Target:  5'- gGGCGGCGaggccGUGGC-GCGCCAGCucgacgAGCAg -3'
miRNA:   3'- gUUGUCGU-----CGUCGuCGCGGUCG------UCGU- -5'
29369 5' -58.1 NC_006151.1 + 82660 0.66 0.726269
Target:  5'- gGGCGGCccacccuGCGGC-GCGCCgcgggcgagGGCGGCGg -3'
miRNA:   3'- gUUGUCGu------CGUCGuCGCGG---------UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 70979 0.66 0.72224
Target:  5'- gCAACAGCAGCcaggacucggccguGGCcaucgugGGCGCCAuGCGccGCGa -3'
miRNA:   3'- -GUUGUCGUCG--------------UCG-------UCGCGGU-CGU--CGU- -5'
29369 5' -58.1 NC_006151.1 + 3972 0.66 0.716172
Target:  5'- -cGCGGCGGCcuCGGCgaGCCGGCcGCGg -3'
miRNA:   3'- guUGUCGUCGucGUCG--CGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 133352 0.66 0.716172
Target:  5'- -cGCGGCGGCGGUGGUGgUGGUGGUg -3'
miRNA:   3'- guUGUCGUCGUCGUCGCgGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 122717 0.66 0.716172
Target:  5'- gGGCGGCGGCccgAGCAcuuugaccGCGCCcgcGCGGCc -3'
miRNA:   3'- gUUGUCGUCG---UCGU--------CGCGGu--CGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.