miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 122717 0.66 0.716172
Target:  5'- gGGCGGCGGCccgAGCAcuuugaccGCGCCcgcGCGGCc -3'
miRNA:   3'- gUUGUCGUCG---UCGU--------CGCGGu--CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 133352 0.66 0.716172
Target:  5'- -cGCGGCGGCGGUGGUGgUGGUGGUg -3'
miRNA:   3'- guUGUCGUCGUCGUCGCgGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 3972 0.66 0.716172
Target:  5'- -cGCGGCGGCcuCGGCgaGCCGGCcGCGg -3'
miRNA:   3'- guUGUCGUCGucGUCG--CGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 141644 0.66 0.716172
Target:  5'- gCGGCGGC-GCGGCGGgGCCccGCGGg- -3'
miRNA:   3'- -GUUGUCGuCGUCGUCgCGGu-CGUCgu -5'
29369 5' -58.1 NC_006151.1 + 61635 0.66 0.715158
Target:  5'- aCGACAccucCGGCGGCGuguggacGCGCCAGCcGCu -3'
miRNA:   3'- -GUUGUc---GUCGUCGU-------CGCGGUCGuCGu -5'
29369 5' -58.1 NC_006151.1 + 27008 0.67 0.706
Target:  5'- gCGAgAGCuGgAGCAGgGCCuGcCAGCAg -3'
miRNA:   3'- -GUUgUCGuCgUCGUCgCGGuC-GUCGU- -5'
29369 5' -58.1 NC_006151.1 + 59864 0.67 0.706
Target:  5'- gCAGCuGCcGCAGCAcCGCUGGCuGGCGa -3'
miRNA:   3'- -GUUGuCGuCGUCGUcGCGGUCG-UCGU- -5'
29369 5' -58.1 NC_006151.1 + 77873 0.67 0.706
Target:  5'- uGACGGCAucccCGGCGuGCGCCccccgcucAGCGGCGa -3'
miRNA:   3'- gUUGUCGUc---GUCGU-CGCGG--------UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 133151 0.67 0.706
Target:  5'- gGACu-CGGCGGCGGCGCgGGCgugGGCc -3'
miRNA:   3'- gUUGucGUCGUCGUCGCGgUCG---UCGu -5'
29369 5' -58.1 NC_006151.1 + 139729 0.67 0.706
Target:  5'- nAGCAcCAGCGGCGGCGaCAGgaGGCGg -3'
miRNA:   3'- gUUGUcGUCGUCGUCGCgGUCg-UCGU- -5'
29369 5' -58.1 NC_006151.1 + 139604 0.67 0.706
Target:  5'- gAGCGGCGGCccguccgggcgcGGCugggggccauccGGCGCCGGC-GCGg -3'
miRNA:   3'- gUUGUCGUCG------------UCG------------UCGCGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 68206 0.67 0.706
Target:  5'- aCGACGuggaAGCGGCccuGCGCCAggcGCAGCGc -3'
miRNA:   3'- -GUUGUcg--UCGUCGu--CGCGGU---CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 57448 0.67 0.704979
Target:  5'- gCGGCGGCccccgcgucggccAGguGCcGCGCC-GCGGCGg -3'
miRNA:   3'- -GUUGUCG-------------UCguCGuCGCGGuCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 64090 0.67 0.704979
Target:  5'- cCAGCAGCAGCccgcacgagaagaGGUcguGGC-CCGGCGGUg -3'
miRNA:   3'- -GUUGUCGUCG-------------UCG---UCGcGGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 92129 0.67 0.702936
Target:  5'- gAACGGCcGCAucgcgcGCGGCGCCAaggccaucauggccGCGGCc -3'
miRNA:   3'- gUUGUCGuCGU------CGUCGCGGU--------------CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 58409 0.67 0.695764
Target:  5'- -cAUGGCGcGCAGCuGgGCguGCGGCAg -3'
miRNA:   3'- guUGUCGU-CGUCGuCgCGguCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 69717 0.67 0.695764
Target:  5'- cCGGgGGCAGCAGC-GCGUCGauguggccccccGCGGCc -3'
miRNA:   3'- -GUUgUCGUCGUCGuCGCGGU------------CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 81875 0.67 0.695764
Target:  5'- uCGAC-GC-GCAGgAGCGCCGGCgccgaGGCGc -3'
miRNA:   3'- -GUUGuCGuCGUCgUCGCGGUCG-----UCGU- -5'
29369 5' -58.1 NC_006151.1 + 133381 0.67 0.695764
Target:  5'- uGGCGGCcggGGCGGCGGCcgggGCCgAGCgGGCGg -3'
miRNA:   3'- gUUGUCG---UCGUCGUCG----CGG-UCG-UCGU- -5'
29369 5' -58.1 NC_006151.1 + 36639 0.67 0.692681
Target:  5'- --cCGGCGGCGGCGGCGCCcccuccgccggaggGGaCcGCGg -3'
miRNA:   3'- guuGUCGUCGUCGUCGCGG--------------UC-GuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.