miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 139705 0.97 0.008059
Target:  5'- gCAACAGCAGCAGCAG-GCCAGCAGCAg -3'
miRNA:   3'- -GUUGUCGUCGUCGUCgCGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 109049 0.91 0.020997
Target:  5'- gCAGCAGCAGCAGCAGCuaCAGCAGCc -3'
miRNA:   3'- -GUUGUCGUCGUCGUCGcgGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 50579 0.88 0.037761
Target:  5'- gCAGCAGCAGCAGCAGCaacaaCAGCAGCGg -3'
miRNA:   3'- -GUUGUCGUCGUCGUCGcg---GUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 69985 0.87 0.0422
Target:  5'- -uGCAGCGGCGGCAGCGUCAGCAcGCu -3'
miRNA:   3'- guUGUCGUCGUCGUCGCGGUCGU-CGu -5'
29369 5' -58.1 NC_006151.1 + 109316 0.86 0.045859
Target:  5'- --uCGGCGGCAGCAGCGgCGGCGGCAa -3'
miRNA:   3'- guuGUCGUCGUCGUCGCgGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 128045 0.86 0.049828
Target:  5'- gCGGCAGCGGCGGCAGCGgCGGCuGCGc -3'
miRNA:   3'- -GUUGUCGUCGUCGUCGCgGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 59418 0.86 0.051224
Target:  5'- ---gAGCAGCAGCGGCGCCAGCucGGCGu -3'
miRNA:   3'- guugUCGUCGUCGUCGCGGUCG--UCGU- -5'
29369 5' -58.1 NC_006151.1 + 90900 0.85 0.058793
Target:  5'- gCAGCcGCuGCAGCAGCGUCAGCAGCc -3'
miRNA:   3'- -GUUGuCGuCGUCGUCGCGGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 90732 0.85 0.062116
Target:  5'- gCGACGGUGGCGGCGGCGCCcucgggGGCGGCGg -3'
miRNA:   3'- -GUUGUCGUCGUCGUCGCGG------UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 21966 0.82 0.090974
Target:  5'- aCAuCGGCGuGguGCGGCGCCGGCAGCGc -3'
miRNA:   3'- -GUuGUCGU-CguCGUCGCGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 36563 0.82 0.090974
Target:  5'- gCAGCGGUGGCcGCAGCGCCGGCAcgGCGg -3'
miRNA:   3'- -GUUGUCGUCGuCGUCGCGGUCGU--CGU- -5'
29369 5' -58.1 NC_006151.1 + 136927 0.82 0.093465
Target:  5'- gAGCAGCAGCAGCcgGGCGCCGaCGGCGc -3'
miRNA:   3'- gUUGUCGUCGUCG--UCGCGGUcGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 36172 0.81 0.109814
Target:  5'- cCAGCAGCAGCAGCAGCcccGCCGG-GGCu -3'
miRNA:   3'- -GUUGUCGUCGUCGUCG---CGGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 10012 0.8 0.125449
Target:  5'- gAGCGGCGGCGGCGGuCGCC-GCGGCc -3'
miRNA:   3'- gUUGUCGUCGUCGUC-GCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 17409 0.8 0.128814
Target:  5'- uGGCGcGCGGCAGCAGgGCCAGCgAGCc -3'
miRNA:   3'- gUUGU-CGUCGUCGUCgCGGUCG-UCGu -5'
29369 5' -58.1 NC_006151.1 + 36015 0.79 0.139417
Target:  5'- cCGACGGCGGCAGCcagggcucccGGCGCC-GCGGCu -3'
miRNA:   3'- -GUUGUCGUCGUCG----------UCGCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 118874 0.79 0.154797
Target:  5'- ---gAGCAGCGGCGGCGC-GGCGGCGa -3'
miRNA:   3'- guugUCGUCGUCGUCGCGgUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 103633 0.79 0.154797
Target:  5'- -cGCGGUGGCGGCGGCGCUGGCGGaCGc -3'
miRNA:   3'- guUGUCGUCGUCGUCGCGGUCGUC-GU- -5'
29369 5' -58.1 NC_006151.1 + 54089 0.78 0.163052
Target:  5'- gCGGCGGCGGCGGCGGCcauGUCGGCuGCGa -3'
miRNA:   3'- -GUUGUCGUCGUCGUCG---CGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 53967 0.78 0.166463
Target:  5'- --cCAGCGGCGGCGGCGCCuccgcgggcgucGCGGCGa -3'
miRNA:   3'- guuGUCGUCGUCGUCGCGGu-----------CGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.