miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 2231 0.67 0.664759
Target:  5'- cCGGCGGCGGC-GCGGaCGCUGGUcucgaagggGGCAa -3'
miRNA:   3'- -GUUGUCGUCGuCGUC-GCGGUCG---------UCGU- -5'
29369 5' -58.1 NC_006151.1 + 2296 0.71 0.434071
Target:  5'- -cGCGGCGGCGaCGGCGCCcggGGuCAGCAc -3'
miRNA:   3'- guUGUCGUCGUcGUCGCGG---UC-GUCGU- -5'
29369 5' -58.1 NC_006151.1 + 2331 0.71 0.461967
Target:  5'- gGGCGGCcucggcgucgGGCuccAGCAGCGCC-GCGGCGc -3'
miRNA:   3'- gUUGUCG----------UCG---UCGUCGCGGuCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 2473 0.66 0.726269
Target:  5'- cCAGCGGuUGGCcgcGCGGUGCCcgaaGGCGGCGc -3'
miRNA:   3'- -GUUGUC-GUCGu--CGUCGCGG----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 2584 0.7 0.500568
Target:  5'- gAGCAcGCgcuGGCGGUAgGCGCgCGGCGGCAg -3'
miRNA:   3'- gUUGU-CG---UCGUCGU-CGCG-GUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 2672 0.68 0.643937
Target:  5'- uGGCGGCAgaggcGCAGCGGCucgGCCccgGGguGCAg -3'
miRNA:   3'- gUUGUCGU-----CGUCGUCG---CGG---UCguCGU- -5'
29369 5' -58.1 NC_006151.1 + 3085 0.73 0.340806
Target:  5'- gCGAaGGCGGCgAGCAGCGCCGagaggccgccGCGGCGc -3'
miRNA:   3'- -GUUgUCGUCG-UCGUCGCGGU----------CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 3248 0.73 0.340806
Target:  5'- -cGCGGCGGCGGagcggGGCGCC-GCGGCGc -3'
miRNA:   3'- guUGUCGUCGUCg----UCGCGGuCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 3528 0.68 0.643937
Target:  5'- gGACAGCAGCgcgggAGCGGgGuCCGG-AGCGg -3'
miRNA:   3'- gUUGUCGUCG-----UCGUCgC-GGUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 3972 0.66 0.716172
Target:  5'- -cGCGGCGGCcuCGGCgaGCCGGCcGCGg -3'
miRNA:   3'- guUGUCGUCGucGUCG--CGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 4073 0.7 0.500568
Target:  5'- gUAGC-GCAcCAGCGGCGCCAcGguGCGg -3'
miRNA:   3'- -GUUGuCGUcGUCGUCGCGGU-CguCGU- -5'
29369 5' -58.1 NC_006151.1 + 4212 0.69 0.571185
Target:  5'- cCGAgGGCGGCcggggcgcgGGCgGGCGCgGGCAGCc -3'
miRNA:   3'- -GUUgUCGUCG---------UCG-UCGCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 4254 0.67 0.685472
Target:  5'- gGGCAG-GGCAGCAGgcgcucgaggaCGCC-GCGGCAg -3'
miRNA:   3'- gUUGUCgUCGUCGUC-----------GCGGuCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 4331 0.7 0.520398
Target:  5'- gGGCuGC-GCGGCGGCGaaGGCGGCGc -3'
miRNA:   3'- gUUGuCGuCGUCGUCGCggUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 4484 0.66 0.716172
Target:  5'- gUAGCGGCGGCucauGGCcacGGCGCUcaccgcguGCGGCAg -3'
miRNA:   3'- -GUUGUCGUCG----UCG---UCGCGGu-------CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 4566 0.72 0.398447
Target:  5'- -uGCGGCAGCGGCGGgGUCAcGCuGCc -3'
miRNA:   3'- guUGUCGUCGUCGUCgCGGU-CGuCGu -5'
29369 5' -58.1 NC_006151.1 + 4797 0.66 0.756016
Target:  5'- gCGGC-GCGGUAGCGG-GCC-GCGGCc -3'
miRNA:   3'- -GUUGuCGUCGUCGUCgCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 4931 0.68 0.612652
Target:  5'- gGugAGCAGCGGCc-CGUCGGuCGGCGg -3'
miRNA:   3'- gUugUCGUCGUCGucGCGGUC-GUCGU- -5'
29369 5' -58.1 NC_006151.1 + 5088 0.67 0.685472
Target:  5'- ---gGGCcGCGGCgGGCGCCGGCGGn- -3'
miRNA:   3'- guugUCGuCGUCG-UCGCGGUCGUCgu -5'
29369 5' -58.1 NC_006151.1 + 5110 0.71 0.461967
Target:  5'- aGACGGUGGCGGCccGGCGCgGGCgAGUg -3'
miRNA:   3'- gUUGUCGUCGUCG--UCGCGgUCG-UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.