miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 141644 0.66 0.716172
Target:  5'- gCGGCGGC-GCGGCGGgGCCccGCGGg- -3'
miRNA:   3'- -GUUGUCGuCGUCGUCgCGGu-CGUCgu -5'
29369 5' -58.1 NC_006151.1 + 139729 0.67 0.706
Target:  5'- nAGCAcCAGCGGCGGCGaCAGgaGGCGg -3'
miRNA:   3'- gUUGUcGUCGUCGUCGCgGUCg-UCGU- -5'
29369 5' -58.1 NC_006151.1 + 139705 0.97 0.008059
Target:  5'- gCAACAGCAGCAGCAG-GCCAGCAGCAg -3'
miRNA:   3'- -GUUGUCGUCGUCGUCgCGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 139675 0.77 0.185439
Target:  5'- cCGACAgGCccuGCGGCAGCGgCGGCGGCAn -3'
miRNA:   3'- -GUUGU-CGu--CGUCGUCGCgGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 139604 0.67 0.706
Target:  5'- gAGCGGCGGCccguccgggcgcGGCugggggccauccGGCGCCGGC-GCGg -3'
miRNA:   3'- gUUGUCGUCG------------UCG------------UCGCGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 139513 0.78 0.180755
Target:  5'- gGACAGCGGCaacAGCAGCGgCAGCgaGGCGu -3'
miRNA:   3'- gUUGUCGUCG---UCGUCGCgGUCG--UCGU- -5'
29369 5' -58.1 NC_006151.1 + 137911 0.69 0.539515
Target:  5'- uCGACGGCGGCGGCugccacgGGCGCCuGCu--- -3'
miRNA:   3'- -GUUGUCGUCGUCG-------UCGCGGuCGucgu -5'
29369 5' -58.1 NC_006151.1 + 137131 0.67 0.664759
Target:  5'- gCGACGGCgcGGCGcgacGCGGCGCCGGagauGGCc -3'
miRNA:   3'- -GUUGUCG--UCGU----CGUCGCGGUCg---UCGu -5'
29369 5' -58.1 NC_006151.1 + 136927 0.82 0.093465
Target:  5'- gAGCAGCAGCAGCcgGGCGCCGaCGGCGc -3'
miRNA:   3'- gUUGUCGUCGUCG--UCGCGGUcGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 135086 0.75 0.262925
Target:  5'- gGGCGGgGGCGGCGGgGCCgggcgGGCGGCGg -3'
miRNA:   3'- gUUGUCgUCGUCGUCgCGG-----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 135020 0.71 0.442338
Target:  5'- gGGgGGCAGCAGCGGgGCCgcgucguccucggGGCGGUc -3'
miRNA:   3'- gUUgUCGUCGUCGUCgCGG-------------UCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 134755 0.69 0.581503
Target:  5'- gAGCAGC-GCGcGCGGgGCCcGCGGCu -3'
miRNA:   3'- gUUGUCGuCGU-CGUCgCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 133963 0.74 0.289444
Target:  5'- gCAGCAGCGGCAGCGGC-CCcuCGGUg -3'
miRNA:   3'- -GUUGUCGUCGUCGUCGcGGucGUCGu -5'
29369 5' -58.1 NC_006151.1 + 133675 0.69 0.591858
Target:  5'- -cGCGGCGGCgcgcccccgaGGCGGUcucGUCGGCGGCGa -3'
miRNA:   3'- guUGUCGUCG----------UCGUCG---CGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 133631 0.69 0.591858
Target:  5'- -cGCGGCGGCcggGGCGGUGguCCGGguGCGa -3'
miRNA:   3'- guUGUCGUCG---UCGUCGC--GGUCguCGU- -5'
29369 5' -58.1 NC_006151.1 + 133480 0.66 0.765718
Target:  5'- aGGCGGCcGCgggcgucaccuuGGCGGCGCgGGgGGCGc -3'
miRNA:   3'- gUUGUCGuCG------------UCGUCGCGgUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 133381 0.67 0.695764
Target:  5'- uGGCGGCcggGGCGGCGGCcgggGCCgAGCgGGCGg -3'
miRNA:   3'- gUUGUCG---UCGUCGUCG----CGG-UCG-UCGU- -5'
29369 5' -58.1 NC_006151.1 + 133352 0.66 0.716172
Target:  5'- -cGCGGCGGCGGUGGUGgUGGUGGUg -3'
miRNA:   3'- guUGUCGUCGUCGUCGCgGUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 133151 0.67 0.706
Target:  5'- gGACu-CGGCGGCGGCGCgGGCgugGGCc -3'
miRNA:   3'- gUUGucGUCGUCGUCGCGgUCG---UCGu -5'
29369 5' -58.1 NC_006151.1 + 132461 0.72 0.389838
Target:  5'- gCAGCAccgcGCGGCAGUAgGCGuCCAGCAgGCGc -3'
miRNA:   3'- -GUUGU----CGUCGUCGU-CGC-GGUCGU-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.