miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 48729 0.66 0.90359
Target:  5'- ---cGaAGGGCAcgcccGCGGCGuCGGCGGCa -3'
miRNA:   3'- aguaCcUCCUGU-----CGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 49818 0.72 0.614857
Target:  5'- aCggGGGGGACgaagggacgacgacGGCGGCGGCGggcccgcgcugggcGCAGCa -3'
miRNA:   3'- aGuaCCUCCUG--------------UCGCCGUUGU--------------CGUCG- -5'
29370 5' -55 NC_006151.1 + 50566 0.68 0.836659
Target:  5'- cUCAgcauccGCAGCaGCAGCAGCAGCa -3'
miRNA:   3'- -AGUaccuccUGUCGcCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 51039 0.68 0.84496
Target:  5'- -gAUGGGGaugguGACGGUGGUggcgauggugauGGCGGCGGCc -3'
miRNA:   3'- agUACCUC-----CUGUCGCCG------------UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 54070 0.77 0.36306
Target:  5'- -gGUGGcgcgcGGACccucuGCGGCGGCGGCGGCg -3'
miRNA:   3'- agUACCu----CCUGu----CGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 54105 0.67 0.890308
Target:  5'- cCAUGucggcuGcGACGGCGGCGGCuGCGGa -3'
miRNA:   3'- aGUACcu----C-CUGUCGCCGUUGuCGUCg -5'
29370 5' -55 NC_006151.1 + 54632 0.71 0.652422
Target:  5'- cCcgGGGGGA-AGCGGCGGC-GCgAGCg -3'
miRNA:   3'- aGuaCCUCCUgUCGCCGUUGuCG-UCG- -5'
29370 5' -55 NC_006151.1 + 56042 0.68 0.842491
Target:  5'- gCGUcGAGGGCGGCGcGCugacgcugcgccucGAgAGCGGCg -3'
miRNA:   3'- aGUAcCUCCUGUCGC-CG--------------UUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 57033 0.66 0.909867
Target:  5'- cCAgGGcAGGAuCAGCGGgGggcGCAGCuGCu -3'
miRNA:   3'- aGUaCC-UCCU-GUCGCCgU---UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 58042 0.66 0.909867
Target:  5'- aCA-GGGGGAagccCAGCGcGCAGUAGUAGUc -3'
miRNA:   3'- aGUaCCUCCU----GUCGC-CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 58408 0.69 0.764001
Target:  5'- cCAUGGcGcGCAGCugGGCGuGCGGCAGCc -3'
miRNA:   3'- aGUACCuCcUGUCG--CCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 58653 0.68 0.810629
Target:  5'- gCcgGGAGGGC-GCGGCGcAgGGCcGCc -3'
miRNA:   3'- aGuaCCUCCUGuCGCCGU-UgUCGuCG- -5'
29370 5' -55 NC_006151.1 + 59135 0.67 0.890308
Target:  5'- -gGUGGGuggcgcccgcGGGCGGguccaggcCGGCGucgcGCAGCAGCg -3'
miRNA:   3'- agUACCU----------CCUGUC--------GCCGU----UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 59398 0.68 0.853059
Target:  5'- aCGUGGcaccGCAGCaccucgaGCAGCAGCGGCg -3'
miRNA:   3'- aGUACCucc-UGUCGc------CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 59728 0.68 0.810629
Target:  5'- gUCAcGG-GGuuGGCGaGCGcgcGCAGCAGCu -3'
miRNA:   3'- -AGUaCCuCCugUCGC-CGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 59853 0.7 0.72445
Target:  5'- gUCcgGGGGGcGCAGCuGCcGCAGCAccGCu -3'
miRNA:   3'- -AGuaCCUCC-UGUCGcCGuUGUCGU--CG- -5'
29370 5' -55 NC_006151.1 + 60738 0.68 0.809734
Target:  5'- ---cGGAGcacgaGGCAGCGGCGGCucgcgaaGGCGGUc -3'
miRNA:   3'- aguaCCUC-----CUGUCGCCGUUG-------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 60862 0.78 0.309137
Target:  5'- cCAUGacGAGGACccGCGGCAgccgcGCAGCAGCc -3'
miRNA:   3'- aGUAC--CUCCUGu-CGCCGU-----UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 61260 0.71 0.652422
Target:  5'- ----cGAGGAC-GCGGCGGCAgGCGGUa -3'
miRNA:   3'- aguacCUCCUGuCGCCGUUGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 62495 0.66 0.90359
Target:  5'- aCGUGGAcaaGGC-GCGGaCGACGGCccGGCg -3'
miRNA:   3'- aGUACCUc--CUGuCGCC-GUUGUCG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.