miRNA display CGI


Results 41 - 60 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 30335 0.7 0.70414
Target:  5'- ---aGGAGG-CGGCGGCGGC-GCgagGGCg -3'
miRNA:   3'- aguaCCUCCuGUCGCCGUUGuCG---UCG- -5'
29370 5' -55 NC_006151.1 + 30757 0.69 0.773608
Target:  5'- ---gGGcGGGGCGGgGGCAGCAcuCAGCg -3'
miRNA:   3'- aguaCC-UCCUGUCgCCGUUGUc-GUCG- -5'
29370 5' -55 NC_006151.1 + 30856 0.83 0.157922
Target:  5'- ---aGGAGGACuGGCGGCGGCGGCGGa -3'
miRNA:   3'- aguaCCUCCUG-UCGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 30883 0.73 0.538566
Target:  5'- ---gGGGGGAagaGGCGGCGagcggagcgcGCGGUAGCg -3'
miRNA:   3'- aguaCCUCCUg--UCGCCGU----------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 31732 0.66 0.921684
Target:  5'- gCGUGGAGaGGCGcccGCGccggggacGCGccuGCGGCGGCg -3'
miRNA:   3'- aGUACCUC-CUGU---CGC--------CGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 33254 0.74 0.479169
Target:  5'- ---cGGGGGAaggguggGGCGGUGGCGGCGGCc -3'
miRNA:   3'- aguaCCUCCUg------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 33313 0.66 0.909867
Target:  5'- gCGUGGgaccgggaccGGGACAgGgGGCGGgGGCGGg -3'
miRNA:   3'- aGUACC----------UCCUGU-CgCCGUUgUCGUCg -5'
29370 5' -55 NC_006151.1 + 33389 0.69 0.783084
Target:  5'- gUCGggcGGAGGACAGaGGCGGagagGGCgAGCg -3'
miRNA:   3'- -AGUa--CCUCCUGUCgCCGUUg---UCG-UCG- -5'
29370 5' -55 NC_006151.1 + 36620 0.66 0.909867
Target:  5'- gCcgGGccGGucuCGGCgcccGGCGGCGGCGGCg -3'
miRNA:   3'- aGuaCCu-CCu--GUCG----CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 36919 0.7 0.738475
Target:  5'- ---cGGAGaGGCGcccuccgccgcggccGCGGCuuCAGCAGCu -3'
miRNA:   3'- aguaCCUC-CUGU---------------CGCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 40122 0.72 0.616942
Target:  5'- -uGUGGAGaucgucggcguccGCGGCGGCGACGGcCGGCc -3'
miRNA:   3'- agUACCUCc------------UGUCGCCGUUGUC-GUCG- -5'
29370 5' -55 NC_006151.1 + 40522 0.77 0.371276
Target:  5'- ---cGGAGGugGcuGCGGCGGCGGCGGa -3'
miRNA:   3'- aguaCCUCCugU--CGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 40556 0.81 0.199001
Target:  5'- -gGUGGuGGA-AGCGGCGGCGGCGGCc -3'
miRNA:   3'- agUACCuCCUgUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 41365 0.69 0.764001
Target:  5'- gUCGUGGAGGGgagggaaaGGCGGUggGAgAGCGGg -3'
miRNA:   3'- -AGUACCUCCUg-------UCGCCG--UUgUCGUCg -5'
29370 5' -55 NC_006151.1 + 42999 0.67 0.860951
Target:  5'- ---cGGGGGAgGGCGGCG--GGCgcuuGGCa -3'
miRNA:   3'- aguaCCUCCUgUCGCCGUugUCG----UCG- -5'
29370 5' -55 NC_006151.1 + 44061 0.69 0.773608
Target:  5'- aCA-GGGGGACGGUGGUgcgguuUGGUAGCa -3'
miRNA:   3'- aGUaCCUCCUGUCGCCGuu----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 44341 0.67 0.890308
Target:  5'- ---aGGAGGGCcGCGGacggguggGACGGCGGg -3'
miRNA:   3'- aguaCCUCCUGuCGCCg-------UUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 44492 0.67 0.876083
Target:  5'- -gGUGGGGGAUGGUguggGGUGGCGGUGGg -3'
miRNA:   3'- agUACCUCCUGUCG----CCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 45167 0.66 0.921684
Target:  5'- -gAUGGAcGGACggGGUGGCGugcccgccaccACGGaCGGCg -3'
miRNA:   3'- agUACCU-CCUG--UCGCCGU-----------UGUC-GUCG- -5'
29370 5' -55 NC_006151.1 + 45328 0.69 0.801604
Target:  5'- ---gGGAGGGUGGCGGUggagGACGGgAGCg -3'
miRNA:   3'- aguaCCUCCUGUCGCCG----UUGUCgUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.