miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 11813 0.8 0.225643
Target:  5'- -gGUGG-GGugGGgGGCGGCGGCGGCu -3'
miRNA:   3'- agUACCuCCugUCgCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 15804 0.66 0.90359
Target:  5'- ---gGGAGGACGGgGGggaaGACGGCGa- -3'
miRNA:   3'- aguaCCUCCUGUCgCCg---UUGUCGUcg -5'
29370 5' -55 NC_006151.1 + 17115 0.65 0.92722
Target:  5'- ---cGGGGGcucCGGCGGCggUgcugcgggaGGCGGCc -3'
miRNA:   3'- aguaCCUCCu--GUCGCCGuuG---------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 17400 0.67 0.890308
Target:  5'- -----cGGGGCGcGUGGCGcGCGGCAGCa -3'
miRNA:   3'- aguaccUCCUGU-CGCCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 18075 0.67 0.876083
Target:  5'- --uUGGGGGcCAGCaGGaCGuCGGCGGCc -3'
miRNA:   3'- aguACCUCCuGUCG-CC-GUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 18148 0.69 0.801604
Target:  5'- cCAUGucGG-CGGgGGCGGCGGCGGg -3'
miRNA:   3'- aGUACcuCCuGUCgCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 18488 0.67 0.868627
Target:  5'- cUCGUGcGuGGGCAGgcugguguacacCGGCGAgAGCAuGCg -3'
miRNA:   3'- -AGUAC-CuCCUGUC------------GCCGUUgUCGU-CG- -5'
29370 5' -55 NC_006151.1 + 19273 0.73 0.573335
Target:  5'- cUCGUGGcgcgcggggcccaccGGGGcCAGCGGCGcgGGCGGCc -3'
miRNA:   3'- -AGUACC---------------UCCU-GUCGCCGUugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 20132 0.71 0.652422
Target:  5'- --cUGGGGGGCgGGCGccGCGGgGGCGGCg -3'
miRNA:   3'- aguACCUCCUG-UCGC--CGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 20313 0.67 0.883311
Target:  5'- cCGUGGcguuGGCGGCGGCgAGCAGgAcGCg -3'
miRNA:   3'- aGUACCuc--CUGUCGCCG-UUGUCgU-CG- -5'
29370 5' -55 NC_006151.1 + 20478 0.69 0.79242
Target:  5'- cCcgGGGGGGC-GCGGgGGucguCGGCGGCu -3'
miRNA:   3'- aGuaCCUCCUGuCGCCgUU----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 20824 0.67 0.883311
Target:  5'- cUCGUGGugcacgcgGGGGCAGaGGUcguacuCGGCGGCg -3'
miRNA:   3'- -AGUACC--------UCCUGUCgCCGuu----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 23028 0.72 0.600274
Target:  5'- -gGUGGAGG-CGGCgaagaagcgGGCGGCcGCGGCg -3'
miRNA:   3'- agUACCUCCuGUCG---------CCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 23692 0.66 0.909867
Target:  5'- ---cGGAGGGCA-UGGCGuccccGgGGCAGCc -3'
miRNA:   3'- aguaCCUCCUGUcGCCGU-----UgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 23726 0.68 0.836659
Target:  5'- cUCGcGGuGGACgAGgGGCAccuuGCAGUGGCc -3'
miRNA:   3'- -AGUaCCuCCUG-UCgCCGU----UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 23939 0.68 0.853059
Target:  5'- gUCGUGGAcGGGguGCcGUAGCAG-AGCu -3'
miRNA:   3'- -AGUACCU-CCUguCGcCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 24801 0.68 0.836659
Target:  5'- aUCGU--GGGACAG-GcGCuGCAGCAGCa -3'
miRNA:   3'- -AGUAccUCCUGUCgC-CGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 25364 0.86 0.106221
Target:  5'- aUCGgaugGGAGG-CGGCGGUGACGGCGGCg -3'
miRNA:   3'- -AGUa---CCUCCuGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 29438 0.69 0.801604
Target:  5'- ---cGGGGGGCGGCGGgGAgAGgGGa -3'
miRNA:   3'- aguaCCUCCUGUCGCCgUUgUCgUCg -5'
29370 5' -55 NC_006151.1 + 29578 0.79 0.287969
Target:  5'- ---gGGAGGACGgaucGCGGCGGCuGCGGCc -3'
miRNA:   3'- aguaCCUCCUGU----CGCCGUUGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.