miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 66927 0.76 0.414218
Target:  5'- -gAUGGAGG-CGGgGGCGagggcaaagGCGGCGGCg -3'
miRNA:   3'- agUACCUCCuGUCgCCGU---------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 6150 0.75 0.423167
Target:  5'- ---cGcGAGGACGGCGGCcucggccuCGGCGGCg -3'
miRNA:   3'- aguaC-CUCCUGUCGCCGuu------GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 5229 0.75 0.432231
Target:  5'- ---aGGAGGccgagcgccgcGCGGCGGCGGCGGgGGCc -3'
miRNA:   3'- aguaCCUCC-----------UGUCGCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 130880 0.75 0.432231
Target:  5'- -aGUGGGcGGCGGCGGUggaGGCGGCGGCc -3'
miRNA:   3'- agUACCUcCUGUCGCCG---UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 125540 0.75 0.441406
Target:  5'- gCGUGGAGGugcGCGGCGGCGuguACGuGCAGa -3'
miRNA:   3'- aGUACCUCC---UGUCGCCGU---UGU-CGUCg -5'
29370 5' -55 NC_006151.1 + 80334 0.75 0.450691
Target:  5'- ---gGGGGGACcGgGGCGAgGGCGGCu -3'
miRNA:   3'- aguaCCUCCUGuCgCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 78568 0.75 0.450691
Target:  5'- cCcgGGAGGAC-GCGGCGACgggccuggagcuGGCGGUc -3'
miRNA:   3'- aGuaCCUCCUGuCGCCGUUG------------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 109035 0.75 0.450691
Target:  5'- ------cGGGCccaccGGCGGCAGCAGCAGCa -3'
miRNA:   3'- aguaccuCCUG-----UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 130583 0.74 0.479169
Target:  5'- aUC-UGGAGGugguGCAGCGGCAcCAGC-GCc -3'
miRNA:   3'- -AGuACCUCC----UGUCGCCGUuGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 33254 0.74 0.479169
Target:  5'- ---cGGGGGAaggguggGGCGGUGGCGGCGGCc -3'
miRNA:   3'- aguaCCUCCUg------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 104585 0.74 0.479169
Target:  5'- aCGUGcugcAGGcCGGCGGCAGCcGCGGCg -3'
miRNA:   3'- aGUACc---UCCuGUCGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 96200 0.74 0.495694
Target:  5'- cCAUGGGGcgccgcgucgccguGGCGGCGGCcGCGGCgaGGCg -3'
miRNA:   3'- aGUACCUC--------------CUGUCGCCGuUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 141673 0.74 0.495694
Target:  5'- gUUGUGGAGGcaugucugccucccACGGCGGCuGGCGGCGGa -3'
miRNA:   3'- -AGUACCUCC--------------UGUCGCCG-UUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 67778 0.74 0.495694
Target:  5'- gCGUuGAGGGCGuccacgugcuccacGCGGCAcucGCGGCAGCa -3'
miRNA:   3'- aGUAcCUCCUGU--------------CGCCGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 135083 0.74 0.498637
Target:  5'- cUCggGcGGGGGCGGCggggccgggcgGGCGGCGGUAGCg -3'
miRNA:   3'- -AGuaC-CUCCUGUCG-----------CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 95273 0.74 0.498637
Target:  5'- aUCAUGGcGuugacgaaGACGGCGGCGACGcgcGCGGCc -3'
miRNA:   3'- -AGUACCuC--------CUGUCGCCGUUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 3524 0.74 0.518449
Target:  5'- ---aGGAGGACAGCaGC-GCGGgAGCg -3'
miRNA:   3'- aguaCCUCCUGUCGcCGuUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 96709 0.74 0.518449
Target:  5'- gCGccGGGGGCGGCGGCGGacgaggaGGCGGCg -3'
miRNA:   3'- aGUacCUCCUGUCGCCGUUg------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 121699 0.74 0.522449
Target:  5'- cCAUGGcGGAgCGGCGGCucguggcgguccuggGGCAGguGCa -3'
miRNA:   3'- aGUACCuCCU-GUCGCCG---------------UUGUCguCG- -5'
29370 5' -55 NC_006151.1 + 112852 0.73 0.538566
Target:  5'- cUCGUGGAcGuGCAGCGGCAcuuuuuccugcACGGCuGCu -3'
miRNA:   3'- -AGUACCU-CcUGUCGCCGU-----------UGUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.