miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 30883 0.73 0.538566
Target:  5'- ---gGGGGGAagaGGCGGCGagcggagcgcGCGGUAGCg -3'
miRNA:   3'- aguaCCUCCUg--UCGCCGU----------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 10461 0.73 0.548725
Target:  5'- ---aGGAGGAC-GCGGCGGCGGUgaaggaggagAGCc -3'
miRNA:   3'- aguaCCUCCUGuCGCCGUUGUCG----------UCG- -5'
29370 5' -55 NC_006151.1 + 133621 0.73 0.558943
Target:  5'- gUC-UGGGGGucGCGGCGGCcGgGGCGGUg -3'
miRNA:   3'- -AGuACCUCC--UGUCGCCGuUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 103237 0.73 0.569213
Target:  5'- -gAUGGAGGACcugcuGCGGCacauccgcgccAugGGCGGCc -3'
miRNA:   3'- agUACCUCCUGu----CGCCG-----------UugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 19273 0.73 0.573335
Target:  5'- cUCGUGGcgcgcggggcccaccGGGGcCAGCGGCGcgGGCGGCc -3'
miRNA:   3'- -AGUACC---------------UCCU-GUCGCCGUugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 109297 0.73 0.57953
Target:  5'- -gAUcGAGcGGCccgccgccucGGCGGCAGCAGCGGCg -3'
miRNA:   3'- agUAcCUC-CUG----------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 126258 0.73 0.57953
Target:  5'- cUCAaGGAGGACGGCGuCGACGaaGGCg -3'
miRNA:   3'- -AGUaCCUCCUGUCGCcGUUGUcgUCG- -5'
29370 5' -55 NC_006151.1 + 131903 0.73 0.57953
Target:  5'- ---aGGGcGACGGgGGCGGCAGCAGg -3'
miRNA:   3'- aguaCCUcCUGUCgCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 132149 0.72 0.589886
Target:  5'- -gGUGGuuGACGGCGcGCAGCugcGCGGCc -3'
miRNA:   3'- agUACCucCUGUCGC-CGUUGu--CGUCG- -5'
29370 5' -55 NC_006151.1 + 132030 0.72 0.589886
Target:  5'- ---cGaGAGGuagcCGGCGGCGcGCGGCAGCg -3'
miRNA:   3'- aguaC-CUCCu---GUCGCCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 82633 0.72 0.589886
Target:  5'- -gGUGGgcgcGGGACcccccuGCGGCGAgGGCGGCc -3'
miRNA:   3'- agUACC----UCCUGu-----CGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 134098 0.72 0.600274
Target:  5'- cCGUGGAcGGAgGGCGGCuGCuGguGUg -3'
miRNA:   3'- aGUACCU-CCUgUCGCCGuUGuCguCG- -5'
29370 5' -55 NC_006151.1 + 23028 0.72 0.600274
Target:  5'- -gGUGGAGG-CGGCgaagaagcgGGCGGCcGCGGCg -3'
miRNA:   3'- agUACCUCCuGUCG---------CCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 105217 0.72 0.600274
Target:  5'- ---aGGcGGACAcGCuGCGGCAGCGGCu -3'
miRNA:   3'- aguaCCuCCUGU-CGcCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 49818 0.72 0.614857
Target:  5'- aCggGGGGGACgaagggacgacgacGGCGGCGGCGggcccgcgcugggcGCAGCa -3'
miRNA:   3'- aGuaCCUCCUG--------------UCGCCGUUGU--------------CGUCG- -5'
29370 5' -55 NC_006151.1 + 40122 0.72 0.616942
Target:  5'- -uGUGGAGaucgucggcguccGCGGCGGCGACGGcCGGCc -3'
miRNA:   3'- agUACCUCc------------UGUCGCCGUUGUC-GUCG- -5'
29370 5' -55 NC_006151.1 + 112048 0.72 0.621116
Target:  5'- ---cGGcGGGCgGGCGGCGGCGGUGGUg -3'
miRNA:   3'- aguaCCuCCUG-UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 97353 0.72 0.621116
Target:  5'- gCggGGaAGGccGCGGCGGCGGCGggcGCGGCg -3'
miRNA:   3'- aGuaCC-UCC--UGUCGCCGUUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 90721 0.72 0.631553
Target:  5'- ---cGcAGG-CGGCGGCGACGGUGGCg -3'
miRNA:   3'- aguaCcUCCuGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 97138 0.72 0.641992
Target:  5'- cCAUGuGGGcCAGCGGCAgguccaccgaGCcGCAGCg -3'
miRNA:   3'- aGUACcUCCuGUCGCCGU----------UGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.