miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 77023 0.66 0.921684
Target:  5'- cCGUGGAGcGcCAGgacgaGGCAGCAcGCGGg -3'
miRNA:   3'- aGUACCUC-CuGUCg----CCGUUGU-CGUCg -5'
29370 5' -55 NC_006151.1 + 120968 0.66 0.921684
Target:  5'- cCAgGcGGGGAacuggAGCGGgcuCAACGGCGGCa -3'
miRNA:   3'- aGUaC-CUCCUg----UCGCC---GUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 127383 0.66 0.921684
Target:  5'- ---cGGGGG-UGGCGGgGGCcGCGGCc -3'
miRNA:   3'- aguaCCUCCuGUCGCCgUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 105962 0.65 0.92722
Target:  5'- cUCAUGGA-GACGGCGaccGUGGCgGGCAuGCg -3'
miRNA:   3'- -AGUACCUcCUGUCGC---CGUUG-UCGU-CG- -5'
29370 5' -55 NC_006151.1 + 17115 0.65 0.92722
Target:  5'- ---cGGGGGcucCGGCGGCggUgcugcgggaGGCGGCc -3'
miRNA:   3'- aguaCCUCCu--GUCGCCGuuG---------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 64219 0.66 0.909867
Target:  5'- gCGUGGGcGccuCGGCGuacagggccGCGACGGCGGCg -3'
miRNA:   3'- aGUACCUcCu--GUCGC---------CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 63466 0.66 0.909867
Target:  5'- ---cGGuucugcucGCAGgGGCGGCGGCGGCg -3'
miRNA:   3'- aguaCCucc-----UGUCgCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 15804 0.66 0.90359
Target:  5'- ---gGGAGGACGGgGGggaaGACGGCGa- -3'
miRNA:   3'- aguaCCUCCUGUCgCCg---UUGUCGUcg -5'
29370 5' -55 NC_006151.1 + 48729 0.66 0.90359
Target:  5'- ---cGaAGGGCAcgcccGCGGCGuCGGCGGCa -3'
miRNA:   3'- aguaCcUCCUGU-----CGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 103337 0.66 0.90359
Target:  5'- --cUGGuGca-GGCGGC-GCAGCAGCg -3'
miRNA:   3'- aguACCuCcugUCGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 105274 0.66 0.90359
Target:  5'- ---gGGAGGACuuugGGCGcGCGcGCGGCcGCg -3'
miRNA:   3'- aguaCCUCCUG----UCGC-CGU-UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 62495 0.66 0.90359
Target:  5'- aCGUGGAcaaGGC-GCGGaCGACGGCccGGCg -3'
miRNA:   3'- aGUACCUc--CUGuCGCC-GUUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 64387 0.66 0.90359
Target:  5'- cCGUGGccaGCccGCGGC-GCAGCAGCg -3'
miRNA:   3'- aGUACCuccUGu-CGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 103835 0.66 0.90925
Target:  5'- cCGUGGAgaugcucGGGCGGCuGCG-CGcGCAGCc -3'
miRNA:   3'- aGUACCU-------CCUGUCGcCGUuGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 23692 0.66 0.909867
Target:  5'- ---cGGAGGGCA-UGGCGuccccGgGGCAGCc -3'
miRNA:   3'- aguaCCUCCUGUcGCCGU-----UgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 33313 0.66 0.909867
Target:  5'- gCGUGGgaccgggaccGGGACAgGgGGCGGgGGCGGg -3'
miRNA:   3'- aGUACC----------UCCUGU-CgCCGUUgUCGUCg -5'
29370 5' -55 NC_006151.1 + 58042 0.66 0.909867
Target:  5'- aCA-GGGGGAagccCAGCGcGCAGUAGUAGUc -3'
miRNA:   3'- aGUaCCUCCU----GUCGC-CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 129493 0.66 0.909867
Target:  5'- ---cGGAGGGCAGCGcgggcGCGAUgacgAGCcGCu -3'
miRNA:   3'- aguaCCUCCUGUCGC-----CGUUG----UCGuCG- -5'
29370 5' -55 NC_006151.1 + 36620 0.66 0.909867
Target:  5'- gCcgGGccGGucuCGGCgcccGGCGGCGGCGGCg -3'
miRNA:   3'- aGuaCCu-CCu--GUCG----CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 57033 0.66 0.909867
Target:  5'- cCAgGGcAGGAuCAGCGGgGggcGCAGCuGCu -3'
miRNA:   3'- aGUaCC-UCCU-GUCGCCgU---UGUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.