miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 90453 0.67 0.890308
Target:  5'- gCAgcgGGuGGACucgAGCGcGCAGCGcCAGCa -3'
miRNA:   3'- aGUa--CCuCCUG---UCGC-CGUUGUcGUCG- -5'
29370 5' -55 NC_006151.1 + 17400 0.67 0.890308
Target:  5'- -----cGGGGCGcGUGGCGcGCGGCAGCa -3'
miRNA:   3'- aguaccUCCUGU-CGCCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 86341 0.67 0.886138
Target:  5'- cCGUGGgcccggacuucuucgGGGACAuGCGGCucucggacgAGgAGCGGCu -3'
miRNA:   3'- aGUACC---------------UCCUGU-CGCCG---------UUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 99555 0.67 0.886138
Target:  5'- aCGUGGGcGcGGCGcgcGCGGCGcugcugcgcgaggugGCGGCGGCc -3'
miRNA:   3'- aGUACCU-C-CUGU---CGCCGU---------------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 129313 0.67 0.883311
Target:  5'- gCAUGGcGGaGGCAGaGGCGGguUAGCGGCc -3'
miRNA:   3'- aGUACC-UC-CUGUCgCCGUU--GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 20824 0.67 0.883311
Target:  5'- cUCGUGGugcacgcgGGGGCAGaGGUcguacuCGGCGGCg -3'
miRNA:   3'- -AGUACC--------UCCUGUCgCCGuu----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 69703 0.67 0.883311
Target:  5'- -gAUGGuGGccGCcGcCGGgGGCAGCAGCg -3'
miRNA:   3'- agUACCuCC--UGuC-GCCgUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 6224 0.67 0.883311
Target:  5'- ---cGGAGGAgCcGCGGCGcCGGgAGCc -3'
miRNA:   3'- aguaCCUCCU-GuCGCCGUuGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 20313 0.67 0.883311
Target:  5'- cCGUGGcguuGGCGGCGGCgAGCAGgAcGCg -3'
miRNA:   3'- aGUACCuc--CUGUCGCCG-UUGUCgU-CG- -5'
29370 5' -55 NC_006151.1 + 18075 0.67 0.876083
Target:  5'- --uUGGGGGcCAGCaGGaCGuCGGCGGCc -3'
miRNA:   3'- aguACCUCCuGUCG-CC-GUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 44492 0.67 0.876083
Target:  5'- -gGUGGGGGAUGGUguggGGUGGCGGUGGg -3'
miRNA:   3'- agUACCUCCUGUCG----CCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 67457 0.67 0.876083
Target:  5'- gCggGGGGGucGCAgagcGCGcGCAGCAGCGGg -3'
miRNA:   3'- aGuaCCUCC--UGU----CGC-CGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 104848 0.67 0.876083
Target:  5'- ---cGGAGGcggaccagGCcGCGGCGACGG-AGCg -3'
miRNA:   3'- aguaCCUCC--------UGuCGCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 73779 0.67 0.876083
Target:  5'- aCGUGcuGGGCGGCGGCGcgcACcuCGGCg -3'
miRNA:   3'- aGUACcuCCUGUCGCCGU---UGucGUCG- -5'
29370 5' -55 NC_006151.1 + 89126 0.67 0.876083
Target:  5'- ----cGAGGGCGGCGGgAcCGGgGGCg -3'
miRNA:   3'- aguacCUCCUGUCGCCgUuGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 108767 0.67 0.875347
Target:  5'- cCGUGGAgaucaaccucgGGACAucuccccGCGGCccCAGUGGCg -3'
miRNA:   3'- aGUACCU-----------CCUGU-------CGCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 122922 0.67 0.868627
Target:  5'- ----cGAGGGCGGCGacgacgcggacGcCGACGGCGGCg -3'
miRNA:   3'- aguacCUCCUGUCGC-----------C-GUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 109907 0.67 0.868627
Target:  5'- --------cGCGGCGGCAGCAGCAGa -3'
miRNA:   3'- aguaccuccUGUCGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 91541 0.67 0.868627
Target:  5'- gCGUGcgcGAGGugcGCGGCcagcggGGCGAUGGCGGCg -3'
miRNA:   3'- aGUAC---CUCC---UGUCG------CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 18488 0.67 0.868627
Target:  5'- cUCGUGcGuGGGCAGgcugguguacacCGGCGAgAGCAuGCg -3'
miRNA:   3'- -AGUAC-CuCCUGUC------------GCCGUUgUCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.