miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 4254 0.67 0.860951
Target:  5'- ---gGGcAGGGCAGCaGGCGcucgaggacgccGCGGCAGg -3'
miRNA:   3'- aguaCC-UCCUGUCG-CCGU------------UGUCGUCg -5'
29370 5' -55 NC_006151.1 + 93432 0.67 0.860951
Target:  5'- ---aGGAGGAgGGgGGCgAGCGGgGGUc -3'
miRNA:   3'- aguaCCUCCUgUCgCCG-UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 42999 0.67 0.860951
Target:  5'- ---cGGGGGAgGGCGGCG--GGCgcuuGGCa -3'
miRNA:   3'- aguaCCUCCUgUCGCCGUugUCG----UCG- -5'
29370 5' -55 NC_006151.1 + 65821 0.67 0.860951
Target:  5'- -gGUGGAuGGGCGGCcGCGcCAGC-GCg -3'
miRNA:   3'- agUACCU-CCUGUCGcCGUuGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 76738 0.67 0.860951
Target:  5'- -gAUGGAGcGCGcguacgcgcGCGGCAGCAGgaaGGCg -3'
miRNA:   3'- agUACCUCcUGU---------CGCCGUUGUCg--UCG- -5'
29370 5' -55 NC_006151.1 + 90668 0.68 0.856241
Target:  5'- ---cGGGGcGGCGggccgcuugucccccGCGGCGGgGGCGGCg -3'
miRNA:   3'- aguaCCUC-CUGU---------------CGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 9991 0.68 0.856241
Target:  5'- ---aGGaAGGAaaaaaaaccucgagAGCGGCGGCGGCGGUc -3'
miRNA:   3'- aguaCC-UCCUg-------------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 75126 0.68 0.853059
Target:  5'- --cUGGucGGCGGcCGGCGGC-GCGGCc -3'
miRNA:   3'- aguACCucCUGUC-GCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 102498 0.68 0.853059
Target:  5'- uUCAUGGAcgccgcggcgcgGGACcccGGCGGCGucuacgaccagACGGUGGUg -3'
miRNA:   3'- -AGUACCU------------CCUG---UCGCCGU-----------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 133137 0.68 0.853059
Target:  5'- uUCAUGucccaGAGGGacuCGGCGGCGGC-GCGGg -3'
miRNA:   3'- -AGUAC-----CUCCU---GUCGCCGUUGuCGUCg -5'
29370 5' -55 NC_006151.1 + 23939 0.68 0.853059
Target:  5'- gUCGUGGAcGGGguGCcGUAGCAG-AGCu -3'
miRNA:   3'- -AGUACCU-CCUguCGcCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 59398 0.68 0.853059
Target:  5'- aCGUGGcaccGCAGCaccucgaGCAGCAGCGGCg -3'
miRNA:   3'- aGUACCucc-UGUCGc------CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 81596 0.68 0.853059
Target:  5'- gUCGccGGGGccgcCGGCGcGCAGCAGCAGg -3'
miRNA:   3'- -AGUacCUCCu---GUCGC-CGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 141620 0.68 0.853059
Target:  5'- gCcgGGAucGGGCGggucgcugccGCGGCGGC-GCGGCg -3'
miRNA:   3'- aGuaCCU--CCUGU----------CGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 118128 0.68 0.853059
Target:  5'- cUCGUGGcGcGCAGCGccgacgacgccGCGGCGGUGGCg -3'
miRNA:   3'- -AGUACCuCcUGUCGC-----------CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 88068 0.68 0.84496
Target:  5'- --cUGcGAGGGCAGgcccucgaGGCGGCAGguGUa -3'
miRNA:   3'- aguAC-CUCCUGUCg-------CCGUUGUCguCG- -5'
29370 5' -55 NC_006151.1 + 4549 0.68 0.84496
Target:  5'- cCAUGGcguccccGAUGuGCGGCAGCGGCGGg -3'
miRNA:   3'- aGUACCuc-----CUGU-CGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 51039 0.68 0.84496
Target:  5'- -gAUGGGGaugguGACGGUGGUggcgauggugauGGCGGCGGCc -3'
miRNA:   3'- agUACCUC-----CUGUCGCCG------------UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 56042 0.68 0.842491
Target:  5'- gCGUcGAGGGCGGCGcGCugacgcugcgccucGAgAGCGGCg -3'
miRNA:   3'- aGUAcCUCCUGUCGC-CG--------------UUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 24801 0.68 0.836659
Target:  5'- aUCGU--GGGACAG-GcGCuGCAGCAGCa -3'
miRNA:   3'- -AGUAccUCCUGUCgC-CGuUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.