miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 131903 0.73 0.57953
Target:  5'- ---aGGGcGACGGgGGCGGCAGCAGg -3'
miRNA:   3'- aguaCCUcCUGUCgCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 131837 0.66 0.896404
Target:  5'- cCGUGGugaugagcGGGGCGGCcgagacgcgcgccGGCGGCgucgggucgcagGGCAGCa -3'
miRNA:   3'- aGUACC--------UCCUGUCG-------------CCGUUG------------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 130921 0.7 0.754271
Target:  5'- -gGUGGccGGGcccGCGGgGGCGGgGGCGGCg -3'
miRNA:   3'- agUACC--UCC---UGUCgCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 130880 0.75 0.432231
Target:  5'- -aGUGGGcGGCGGCGGUggaGGCGGCGGCc -3'
miRNA:   3'- agUACCUcCUGUCGCCG---UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 130583 0.74 0.479169
Target:  5'- aUC-UGGAGGugguGCAGCGGCAcCAGC-GCc -3'
miRNA:   3'- -AGuACCUCC----UGUCGCCGUuGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 130357 0.69 0.79242
Target:  5'- gUCGUGGuuGACGGCcGCGcgcGCcGCGGCg -3'
miRNA:   3'- -AGUACCucCUGUCGcCGU---UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 129493 0.66 0.909867
Target:  5'- ---cGGAGGGCAGCGcgggcGCGAUgacgAGCcGCu -3'
miRNA:   3'- aguaCCUCCUGUCGC-----CGUUG----UCGuCG- -5'
29370 5' -55 NC_006151.1 + 129313 0.67 0.883311
Target:  5'- gCAUGGcGGaGGCAGaGGCGGguUAGCGGCc -3'
miRNA:   3'- aGUACC-UC-CUGUCgCCGUU--GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 128386 0.71 0.662836
Target:  5'- gUCAc-GAGGuccACGGCGGCcacGACGGCGGCc -3'
miRNA:   3'- -AGUacCUCC---UGUCGCCG---UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 128258 0.71 0.662836
Target:  5'- -gGUGGuGGA-AGCGGCAcugcGCGcGCAGCg -3'
miRNA:   3'- agUACCuCCUgUCGCCGU----UGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 128046 0.77 0.371276
Target:  5'- -------cGGCAGCGGCGGCAGCGGCg -3'
miRNA:   3'- aguaccucCUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 128004 0.78 0.316452
Target:  5'- gUCGcGGucgcGGGGCGGCGGCGACGGCGucuGCg -3'
miRNA:   3'- -AGUaCC----UCCUGUCGCCGUUGUCGU---CG- -5'
29370 5' -55 NC_006151.1 + 127383 0.66 0.921684
Target:  5'- ---cGGGGG-UGGCGGgGGCcGCGGCc -3'
miRNA:   3'- aguaCCUCCuGUCGCCgUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 126258 0.73 0.57953
Target:  5'- cUCAaGGAGGACGGCGuCGACGaaGGCg -3'
miRNA:   3'- -AGUaCCUCCUGUCGCcGUUGUcgUCG- -5'
29370 5' -55 NC_006151.1 + 125540 0.75 0.441406
Target:  5'- gCGUGGAGGugcGCGGCGGCGuguACGuGCAGa -3'
miRNA:   3'- aGUACCUCC---UGUCGCCGU---UGU-CGUCg -5'
29370 5' -55 NC_006151.1 + 122960 0.7 0.714331
Target:  5'- ---cGGGGGGCGcggacGcCGGCGACGGgGGCg -3'
miRNA:   3'- aguaCCUCCUGU-----C-GCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 122922 0.67 0.868627
Target:  5'- ----cGAGGGCGGCGacgacgcggacGcCGACGGCGGCg -3'
miRNA:   3'- aguacCUCCUGUCGC-----------C-GUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 122439 0.77 0.347009
Target:  5'- cCcgGGAGGcggaGGCGGCGuccACGGCGGCg -3'
miRNA:   3'- aGuaCCUCCug--UCGCCGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 121699 0.74 0.522449
Target:  5'- cCAUGGcGGAgCGGCGGCucguggcgguccuggGGCAGguGCa -3'
miRNA:   3'- aGUACCuCCU-GUCGCCG---------------UUGUCguCG- -5'
29370 5' -55 NC_006151.1 + 121321 0.66 0.915899
Target:  5'- gCGUGGAGG-CGGCcGCcgAGCuGguGCg -3'
miRNA:   3'- aGUACCUCCuGUCGcCG--UUGuCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.